Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq307 114 1e-20 seq467 113 4e-20 >seq307 Length=2169461 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || |||||||||||||||||||| || ||| ||| ||||||||||| Sbjct 1515646 TGAAGGGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTCCCATCTTCGAGCTGC 1515587 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| | |||||||| || ||||| || ||||||||||| ||| || Sbjct 1515586 TTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTA 1515527 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||| | | || | |||||| | || ||||| || | ||| | || || || || Sbjct 1515526 GCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTTCCCTGTG 1515467 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 1515466 AGAGTCTTCACGAAGATTTGCAT 1515444 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || |||||||||||||||||||| || ||| || ||||||||||| Sbjct 1510749 TGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGC 1510690 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| | |||||||| || ||||| || ||||||||||| ||| || Sbjct 1510689 TTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTA 1510630 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||| | | || | |||||| | || ||||| || | ||| | || || || || Sbjct 1510629 GCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTTCCCTGTG 1510570 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 1510569 AGAGTCTTCACGAAGATTTGCAT 1510547 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || |||||||||||||||||||| || ||| || ||||||||||| Sbjct 1510293 TGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGC 1510234 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| | |||||||| || ||||| || || |||||||| ||| || Sbjct 1510233 TTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTC 1510174 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| | |||||| | | || || || | ||| | || || || || Sbjct 1510173 GCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCTGTG 1510114 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 1510113 AGAGTCTTGACGAAGATTTGCAT 1510091 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || |||||||||||||||||||| || ||| || ||||||||||| Sbjct 1510521 TGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGC 1510462 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| | |||||||| || ||||| || || |||||||| ||| || Sbjct 1510461 TTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTC 1510402 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| | |||||| | | || || || | ||| | || || || || Sbjct 1510401 GCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCTGTG 1510342 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 1510341 AGAGTCTTGACGAAGATTTGCAT 1510319 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || |||||||||||||||||||| || ||| || ||||||||||| Sbjct 1514955 TGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGC 1514896 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| | |||||||| || ||||| || || |||||||| ||| || Sbjct 1514895 TTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTC 1514836 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| | |||||| | | || || || | ||| | || || || || Sbjct 1514835 GCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCTGTG 1514776 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 1514775 AGAGTCTTGACGAAGATTTGCAT 1514753 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || |||||||||||||| ||||| | ||| ||| ||||||||||| Sbjct 1515874 TGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAGAGTGTCCTCCCATCTTCGAGCTGC 1515815 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| | ||||||||||| |||||||| || |||||||| ||| || Sbjct 1515814 TTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGGTATTCCCTCTTTGTCCTGGATCTTA 1515755 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||| | | || | |||||| | | || || || | ||| | || || || || Sbjct 1515754 GCTTTGACATTCTCTATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCTGTG 1515695 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 1515694 AGAGTCTTGACGAAGATTTGCAT 1515672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || |||||||||||||||||||| || ||| || ||||||||||| Sbjct 1510065 TGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGC 1510006 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| | |||||||| || ||||| || || |||||||| ||| || Sbjct 1510005 TTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTC 1509946 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| | |||||| | | || || || | || | || || || || Sbjct 1509945 GCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGAGTGATGGTTTTCCCTGTG 1509886 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 1509885 AGTGTCTTCACGAAGATTTGCAT 1509863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/234 (68%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC---- 139593 || ||||| | | || || | ||||| || || ||||||||||| |||||||| Sbjct 1515214 CCTCCTCGAAGTCTCAGCACAAGGTGAAGTGTTGATTCTTTTTGAATATTATAATCTGAG 1515155 Query 139594 ---GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650 | | | ||| || ||||||||||| || || ||| |||| | |||||||| || Sbjct 1515154 AGTGTTGAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTC 1515095 Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGG 139710 ||||| || || |||||||| ||| ||| |||| | ||| | |||||| | | Sbjct 1515094 TGGAGGGATTCCCTCTTTGTCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAAGC 1515035 Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || | ||| | || || || || | || || ||||| |||||||| Sbjct 1515034 TTCGACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514981 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | |||||| | |||| || || |||||||||||||| ||||| Sbjct 1515442 CCTCCTCGAAGTCTCAAAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAG 1515383 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| || ||||| |||||| |||| | |||||||||| || || Sbjct 1515382 AGTGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAGATTAATCGTTGCTGATGAGGGGGA 1515323 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| ||| |||| | ||| | |||||| | | || || Sbjct 1515322 ATTCCCTCTTTGTCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACT 1515263 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || | || || || || |||||||| Sbjct 1515262 TCCAGAGTGATGGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCAT 1515216 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || |||||||||||||||||||| || ||| || ||||||||||| Sbjct 1509837 TGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGC 1509778 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || || ||| |||| | |||||||| || ||||| || || |||||||| Sbjct 1509777 TTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTC 1509728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | || || | ||||| || || ||||||||||| |||||||| Sbjct 1514751 CCTCCTCGAAGTCTCAGCACAAGGTGAAGTGTTGATTCTTTTTGAATATTATAATCTGAA 1514692 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| ||||| || |||||| |||| | ||||||||||| ||||| Sbjct 1514691 AGTGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAAGATTAATCGTTGCTGATCAGGAGGA 1514632 Query 139658 ATGCCTTCTTTGTC 139671 || |||||||| || Sbjct 1514631 ATTCCTTCTTTATC 1514618 >seq467 Length=2555529 Score = 113 bits (124), Expect = 4e-20 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || || ||||||||||| || |||||| | |||| || | ||||| | || Sbjct 1365912 TGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCA-TCTTCTAATTG 1365970 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 |||||||||| |||||| | ||| ||||| ||||| || ||||||||||| ||| ||| Sbjct 1365971 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC-CTGAATTT 1366029 Query 139681 TTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | |||| | | ||| | ||| || | | ||||| || | || | ||||| || | Sbjct 1366030 TGGCTTTAACATTTTCAATTGTATCTGATGCTTCCACTTCGAGAGTGATGGTCTTTCCAG 1366089 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 |||| || |||||||| || ||||| Sbjct 1366090 TCAATGTCTTTACGAAGATCTGCAT 1366114 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || || ||||||||||| || |||||| | |||| || | ||||| | || Sbjct 1364639 TGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCA-TCTTCTAATTG 1364697 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 |||||||||| |||||| | ||| ||||| ||||| || ||||||||||| ||| ||| Sbjct 1364698 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC-CTGAATTT 1364756 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | |||| | || | ||||| | | ||| || || | ||| | || || || | Sbjct 1364757 TAGCCTTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAG 1364816 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| |||||||| ||||| Sbjct 1364817 TAAGGGTTTTCACGAATATCTGCAT 1364841 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| ||||| || ||||| || || || || Sbjct 1366344 CCACCACGGAGACGGAGTACAAGGTGAAGTGTAGATTCCTTTTGTATATTGTAGTCAGAA 1366403 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| | ||||||||||| |||||| | |||||||| || || Sbjct 1366404 AGTGTGCGTCCA-TCTTCTAATTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGG 1366462 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| ||||| || ||||||| ||| | | || | ||||| | | ||| || Sbjct 1366463 GATGCCCTCTTTATCCTGGATTTTTGCTTTAACATTCTCGATGGTGTCTGATGCCTCAAC 1366522 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || || || ||||| || |||||||| || ||||| Sbjct 1366523 CTCGAGGGTTATGGTTTTTCCCGTCAATGTCTTTACGAAAATCTGCAT 1366570 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/220 (71%), Gaps = 18/220 (8%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || || ||||||||||| || |||||| | |||| || | ||||| | || Sbjct 1364986 TGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCA-TCTTCTAATTG 1365044 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT- 139679 |||||||||| |||||| | ||| ||||| ||||| || |||||||||| | || || Sbjct 1365045 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGT-GATGCCTTC 1365103 Query 139680 -TT----TG--TTTTAGCT-----GTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGT 139725 || || |||||||| |||| || | ||||| | | ||| || || | || Sbjct 1365104 CTTATCCTGGATTTTAGCTTTAACGTTCTCAATAGTGTCCGATGCCTCAACTTCCAAAGT 1365163 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||||| ||||| | ||||| ||||| ||||||||| Sbjct 1365164 AATGGTCTTTCCGGTAAGAGTTTTCACGAAAATTTGCATA 1365203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| ||||||||||| || | ||||| || | ||||| | ||||| || Sbjct 1365234 GTCGACTCTTTCTGAATGTTATAGTCAGATAATGTGCGTCCA-TCTTCCAATTGTTTGCC 1365292 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TT 139685 |||| | |||| | || || || ||||| || ||||||||||| ||| |||| | | Sbjct 1365293 AGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTC-CTGAATTTTAGCCT 1365351 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 ||| | || | ||||| | | ||| || || | ||| | || || || || | | Sbjct 1365352 TTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGG 1365411 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| |||||||| ||||| Sbjct 1365412 TTTTCACGAATATCTGCAT 1365430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496025145787200