Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq105 196 7e-45
seq305 120 4e-22
>seq105
Length=615523
Score = 196 bits (216), Expect = 7e-45
Identities = 228/308 (74%), Gaps = 0/308 (0%)
Strand=Plus/Minus
Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026
|||||||| ||| | ||| ||||| ||| || || | ||| | ||| | | |||
Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462
Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086
|| |||||| ||| | | ||| ||||| |||| ||||||||||| ||||| ||||
Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402
Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146
|| || ||||| ||||| || || ||||| | ||||||||||||||||||||||| ||
Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342
Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATT 79206
|| ||||| |||||||| || || | ||| ||| |||||| | |||| | | |||
Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282
Query 79207 TTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATAT 79266
|| |||||||| | | |||| ||||| | ||||| || ||| ||||| | |||||||
Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGTGTAACGTTCCACATATCATAT 157222
Query 79267 TGTAGAAT 79274
|||| |||
Sbjct 157221 TGTAAAAT 157214
Score = 125 bits (138), Expect = 1e-23
Identities = 125/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 79849 GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA 79908
|||||||| |||||| || || ||||||||||| ||||||||||| |||| | |||
Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332
Query 79909 CACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968
|||||||| | ||| | |||| ||| |||||||||||||| ||||||||||||||
Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272
Query 79969 AGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010
| ||| ||||| ||||| | ||||| || || || |||
Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230
Score = 109 bits (120), Expect = 8e-19
Identities = 216/314 (69%), Gaps = 12/314 (4%)
Strand=Plus/Minus
Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067
|| ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | |||
Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110
Query 80068 ATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127
| || | |||| || ||||| |||||||||||||| | |||||||| ||||||||
Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050
Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG--C 80185
|| || || | ||| || | | ||||| ||| |||| || || || ||| |
Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992
Query 80186 TTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241
| || || || || || || ||| ||| ||| || || || || || |||
Sbjct 155991 TACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTA 155936
Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTA 80301
|| ||||| || | || || |||||||| || || || |||||||| ||| |||| |
Sbjct 155935 ATCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAA 155876
Query 80302 AGTAGAAAACAGCT 80315
|| || ||||| ||
Sbjct 155875 AGAAGGAAACAACT 155862
Score = 102 bits (112), Expect = 1e-16
Identities = 227/336 (68%), Gaps = 15/336 (4%)
Strand=Plus/Minus
Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519
|||| |||||||||||||| ||| || ||| ||||||||||| ||||| ||||| |
Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805
Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 79576
||| |||| ||||| | ||| | | || ||| |||| ||| | || |||||
Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATT--TTTG-TCACCTTTTTAAGTTTTT 156748
Query 79577 GAAAATCAAA-----TCGTCCATCTATT-ACAAACATGTTCAACGCGACAGATGCCAGAT 79630
||||||| || | | | ||| |||||||| || | || | || |||| ||
Sbjct 156747 GAAAATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAAT 156688
Query 79631 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTAC 79690
| || || || || |||| || | ||| || | | ||| || || | |||||||
Sbjct 156687 TGCATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTAC 156628
Query 79691 ACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 79750
|||||| ||||||| ||||| ||||| |||| || || ||| || ||||| |
Sbjct 156627 TCTTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCA 156568
Query 79751 TGAACGGAGTACCAGTTTCAATCTGAGATTCTATAA 79786
| |||| || || || || | |||| ||||||
Sbjct 156567 TATACGGGGTTCCTGTCTCTACTTGAG---CTATAA 156535
Score = 100 bits (110), Expect = 4e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747
||| |||||||| || || ||||| || || || || | || ||||||| ||||||||
Sbjct 155343 TTTCTTTGTTTCTTTATGAAGATTGGAAACTGCAATGCGTGCAGCTAAAACAGCATAATC 155284
Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807
|||||||| ||||| ||||||||| |||| ||||| ||| | || ||||| || ||
Sbjct 155283 TGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACAGT 155224
Query 80808 TGTTACTCCATTATATATTCCTTGGATAAC 80837
|| || ||| ||||| || ||||||
Sbjct 155223 GGTGACACCAGAATATAAACCACTGATAAC 155194
>seq305
Length=1407860
Score = 120 bits (132), Expect = 4e-22
Identities = 123/161 (76%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310
|||||||| ||||| | ||||| || || | || || || |||||||| | |||||
Sbjct 686682 TACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCT 686741
Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370
|| ||||| ||||| || |||||||||| | | ||||||||| || ||||| ||| |
Sbjct 686742 GTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAG 686801
Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTC 50411
||||||||||| || |||||||| ||| ||||| || ||
Sbjct 686802 GCTGCAAAAAATGCTAATACATGAGATATGAAATGCTTCTC 686842
Score = 89.7 bits (98), Expect = 7e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847
|| ||| || ||||||||||| |||||| ||| | || ||||||||| ||||| |
Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110
Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907
|| ||| || | || | || | ||||||||||||||| || |||||| | |||||
Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170
Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967
|| |||| || | ||| || | | |||||||||||| |||||||| ||
Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACATGCAAA 686230
Query 49968 ATCGCAGTGCAGACCCT 49984
||| || || | ||||
Sbjct 686231 ATCACAATGTAATCCCT 686247
Score = 89.7 bits (98), Expect = 7e-13
Identities = 157/228 (69%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| || ||| ||| ||||| ||| ||||| ||||| ||||| || || | ||| |
Sbjct 686325 CCTCATCCCTAGAAATAAGTTCATTGCTGAACGTAAGTCCTGGCATAAGTCCTCTCTTCT 686384
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| | ||| || |||| ||||| ||| ||||| || ||||||||||||||||| |
Sbjct 686385 TTAACCAGAAAATGGCAGCAAAGCTACCACTGAAGAAAATACCTTCTACTGCGGCAAATG 686444
Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158
| || | | || || | ||| | ||||| |||||| || ||||||| |
Sbjct 686445 CGACTACACGTTCAGGGAAAGTAGCGGTTTCATGGTTTATCCAATTCAATGCCCAATTAG 686504
Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206
| || ||| ||||| || | |||| ||||||||||| | | |||
Sbjct 686505 CTTTTTTTGCAACACAGGGTAAATTTTCAATGGCATTAAATAAAAAGT 686552
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/118 (76%), Gaps = 1/118 (1%)
Strand=Plus/Plus
Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495
||| ||| ||| ||| | ||| ||||| ||||| ||||| || || || || || |||||
Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005
Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553
|||||| | ||| || ||| | |||| || || || | |||||||||| |||||||
Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTT 687063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718212541596240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |