Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq105 196 7e-45 seq305 120 4e-22 >seq105 Length=615523 Score = 196 bits (216), Expect = 7e-45 Identities = 228/308 (74%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026 |||||||| ||| | ||| ||||| ||| || || | ||| | ||| | | ||| Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462 Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086 || |||||| ||| | | ||| ||||| |||| ||||||||||| ||||| |||| Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402 Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 || || ||||| ||||| || || ||||| | ||||||||||||||||||||||| || Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATT 79206 || ||||| |||||||| || || | ||| ||| |||||| | |||| | | ||| Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282 Query 79207 TTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATAT 79266 || |||||||| | | |||| ||||| | ||||| || ||| ||||| | ||||||| Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGTGTAACGTTCCACATATCATAT 157222 Query 79267 TGTAGAAT 79274 |||| ||| Sbjct 157221 TGTAAAAT 157214 Score = 125 bits (138), Expect = 1e-23 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 79849 GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA 79908 |||||||| |||||| || || ||||||||||| ||||||||||| |||| | ||| Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332 Query 79909 CACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968 |||||||| | ||| | |||| ||| |||||||||||||| |||||||||||||| Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272 Query 79969 AGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 | ||| ||||| ||||| | ||||| || || || ||| Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230 Score = 109 bits (120), Expect = 8e-19 Identities = 216/314 (69%), Gaps = 12/314 (4%) Strand=Plus/Minus Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 || ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | ||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 80068 ATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127 | || | |||| || ||||| |||||||||||||| | |||||||| |||||||| Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG--C 80185 || || || | ||| || | | ||||| ||| |||| || || || ||| | Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992 Query 80186 TTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241 | || || || || || || ||| ||| ||| || || || || || ||| Sbjct 155991 TACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTA 155936 Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTA 80301 || ||||| || | || || |||||||| || || || |||||||| ||| |||| | Sbjct 155935 ATCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAA 155876 Query 80302 AGTAGAAAACAGCT 80315 || || ||||| || Sbjct 155875 AGAAGGAAACAACT 155862 Score = 102 bits (112), Expect = 1e-16 Identities = 227/336 (68%), Gaps = 15/336 (4%) Strand=Plus/Minus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| |||||||||||||| ||| || ||| ||||||||||| ||||| ||||| | Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805 Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 79576 ||| |||| ||||| | ||| | | || ||| |||| ||| | || ||||| Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATT--TTTG-TCACCTTTTTAAGTTTTT 156748 Query 79577 GAAAATCAAA-----TCGTCCATCTATT-ACAAACATGTTCAACGCGACAGATGCCAGAT 79630 ||||||| || | | | ||| |||||||| || | || | || |||| || Sbjct 156747 GAAAATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAAT 156688 Query 79631 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTAC 79690 | || || || || |||| || | ||| || | | ||| || || | ||||||| Sbjct 156687 TGCATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTAC 156628 Query 79691 ACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 79750 |||||| ||||||| ||||| ||||| |||| || || ||| || ||||| | Sbjct 156627 TCTTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCA 156568 Query 79751 TGAACGGAGTACCAGTTTCAATCTGAGATTCTATAA 79786 | |||| || || || || | |||| |||||| Sbjct 156567 TATACGGGGTTCCTGTCTCTACTTGAG---CTATAA 156535 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 ||| |||||||| || || ||||| || || || || | || ||||||| |||||||| Sbjct 155343 TTTCTTTGTTTCTTTATGAAGATTGGAAACTGCAATGCGTGCAGCTAAAACAGCATAATC 155284 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 |||||||| ||||| ||||||||| |||| ||||| ||| | || ||||| || || Sbjct 155283 TGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACAGT 155224 Query 80808 TGTTACTCCATTATATATTCCTTGGATAAC 80837 || || ||| ||||| || |||||| Sbjct 155223 GGTGACACCAGAATATAAACCACTGATAAC 155194 >seq305 Length=1407860 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| ||||| | ||||| || || | || || || |||||||| | ||||| Sbjct 686682 TACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCT 686741 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || ||||| ||||| || |||||||||| | | ||||||||| || ||||| ||| | Sbjct 686742 GTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAG 686801 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTC 50411 ||||||||||| || |||||||| ||| ||||| || || Sbjct 686802 GCTGCAAAAAATGCTAATACATGAGATATGAAATGCTTCTC 686842 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || ||| || ||||||||||| |||||| ||| | || ||||||||| ||||| | Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 || ||| || | || | || | ||||||||||||||| || |||||| | ||||| Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 || |||| || | ||| || | | |||||||||||| |||||||| || Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACATGCAAA 686230 Query 49968 ATCGCAGTGCAGACCCT 49984 ||| || || | |||| Sbjct 686231 ATCACAATGTAATCCCT 686247 Score = 89.7 bits (98), Expect = 7e-13 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || ||| ||| ||||| ||| ||||| ||||| ||||| || || | ||| | Sbjct 686325 CCTCATCCCTAGAAATAAGTTCATTGCTGAACGTAAGTCCTGGCATAAGTCCTCTCTTCT 686384 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || |||| ||||| ||| ||||| || ||||||||||||||||| | Sbjct 686385 TTAACCAGAAAATGGCAGCAAAGCTACCACTGAAGAAAATACCTTCTACTGCGGCAAATG 686444 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158 | || | | || || | ||| | ||||| |||||| || ||||||| | Sbjct 686445 CGACTACACGTTCAGGGAAAGTAGCGGTTTCATGGTTTATCCAATTCAATGCCCAATTAG 686504 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 | || ||| ||||| || | |||| ||||||||||| | | ||| Sbjct 686505 CTTTTTTTGCAACACAGGGTAAATTTTCAATGGCATTAAATAAAAAGT 686552 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 ||| ||| ||| ||| | ||| ||||| ||||| ||||| || || || || || ||||| Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005 Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 |||||| | ||| || ||| | |||| || || || | |||||||||| ||||||| Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTT 687063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718212541596240