Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq305 120 3e-22 >seq305 Length=1407860 Score = 120 bits (132), Expect = 3e-22 Identities = 165/227 (73%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || || | |||||||| || | || | ||| || || | ||| || ||||||||| || Sbjct 686025 ACCTTCTGACAACCTAACTCCACGAGCAGTCTGTCTGCGACAAATTCGATATATTGACAC 686084 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | | ||||||||| ||||| | || ||||| | | || ||||||||||||| | Sbjct 686085 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 686144 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTC-ATTAGAAGGAGGATATT- 13851 || || |||||| |||| ||||||||| ||| ||| | ||||| || | || Sbjct 686145 TCAATTTCCACAGCATCTT---TAATAATTGACGTAA-CTCGCTCAGAAGACGGCTTTTG 686200 Query 13852 --TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 | | ||||||||| |||||||| |||||||||||||| | |||| Sbjct 686201 TATAATATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCCT 686247 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| ||||| | |||| |||| ||||| ||||| ||||||||||||| || |||| Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACAC 13675 ||||||||||||||||||||| |||||| |||| Sbjct 685921 TCCATAAAATCAAATGGATTTTCGGACATATACAC 685955 Score = 100 bits (110), Expect = 3e-16 Identities = 135/184 (73%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 |||| ||||| | | || |||||| |||||||| | ||| |||||||| || || | Sbjct 686639 CCTT-TCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCA 686697 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC- 14240 ||||||||||||| || || ||||| || || | || || | ||||||||| Sbjct 686698 CATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCT 686757 Query 14241 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14300 || | ||||| ||| | | ||||||||| || || |||||| |||||||||||||| Sbjct 686758 GACT-AAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCT 686816 Query 14301 AATA 14304 |||| Sbjct 686817 AATA 686820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479690425304400