Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq305 120 3e-22
>seq305
Length=1407860
Score = 120 bits (132), Expect = 3e-22
Identities = 165/227 (73%), Gaps = 8/227 (4%)
Strand=Plus/Plus
Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733
|| || | |||||||| || | || | ||| || || | ||| || ||||||||| ||
Sbjct 686025 ACCTTCTGACAACCTAACTCCACGAGCAGTCTGTCTGCGACAAATTCGATATATTGACAC 686084
Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793
|| | | ||||||||| ||||| | || ||||| | | || ||||||||||||| |
Sbjct 686085 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 686144
Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTC-ATTAGAAGGAGGATATT- 13851
|| || |||||| |||| ||||||||| ||| ||| | ||||| || | ||
Sbjct 686145 TCAATTTCCACAGCATCTT---TAATAATTGACGTAA-CTCGCTCAGAAGACGGCTTTTG 686200
Query 13852 --TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896
| | ||||||||| |||||||| |||||||||||||| | ||||
Sbjct 686201 TATAATATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCCT 686247
Score = 100 bits (110), Expect = 3e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640
||||| ||||| | |||| |||| ||||| ||||| ||||||||||||| || ||||
Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920
Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACAC 13675
||||||||||||||||||||| |||||| ||||
Sbjct 685921 TCCATAAAATCAAATGGATTTTCGGACATATACAC 685955
Score = 100 bits (110), Expect = 3e-16
Identities = 135/184 (73%), Gaps = 3/184 (2%)
Strand=Plus/Plus
Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181
|||| ||||| | | || |||||| |||||||| | ||| |||||||| || || |
Sbjct 686639 CCTT-TCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCA 686697
Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC- 14240
||||||||||||| || || ||||| || || | || || | |||||||||
Sbjct 686698 CATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCT 686757
Query 14241 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14300
|| | ||||| ||| | | ||||||||| || || |||||| ||||||||||||||
Sbjct 686758 GACT-AAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCT 686816
Query 14301 AATA 14304
||||
Sbjct 686817 AATA 686820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479690425304400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |