Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq305 105 6e-18 >seq305 Length=1407860 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 || || | |||||||| || | | | ||| || || | ||| || ||||||||| || Sbjct 686025 ACCTTCTGACAACCTAACTCCACGAGCAGTCTGTCTGCGACAAATTCGATATATTGACAC 686084 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 || | | ||||||||| ||||| | || ||||| | | || ||||||||||||| | Sbjct 686085 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 686144 Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT 13641 || || |||||| || || ||||| | ||| ||| ||| || | | | Sbjct 686145 TCAATTTCCACAGCATCTTTAATAATTGACGTAACTCGCTCAGAAGACGGCTTTTGTATA 686204 Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 | ||||||||| |||||||| |||||||||||||| | |||| Sbjct 686205 ATATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCCT 686247 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||| ||||| | |||| |||| ||||||||||| ||||||||||||| || |||| Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACAC 13463 ||||||||||| ||||||||| |||||| |||| Sbjct 685921 TCCATAAAATCAAATGGATTTTCGGACATATACAC 685955 Score = 100 bits (110), Expect = 3e-16 Identities = 135/184 (73%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 |||| ||||| | | || |||||| |||||||| | ||| |||||||| || || | Sbjct 686639 CCTT-TCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCA 686697 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC- 14028 ||||| ||||||| || || ||||| ||||| | || |||| ||||| ||| Sbjct 686698 CATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCT 686757 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 || |||| || ||| | | |||||||| ||||| |||||| |||||||||||||| Sbjct 686758 GACTAAA-TCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCT 686816 Query 14089 AATA 14092 |||| Sbjct 686817 AATA 686820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478551314532240