Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq305 105 6e-18
>seq305
Length=1407860
Score = 105 bits (116), Expect = 6e-18
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521
|| || | |||||||| || | | | ||| || || | ||| || ||||||||| ||
Sbjct 686025 ACCTTCTGACAACCTAACTCCACGAGCAGTCTGTCTGCGACAAATTCGATATATTGACAC 686084
Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581
|| | | ||||||||| ||||| | || ||||| | | || ||||||||||||| |
Sbjct 686085 ATAAGTTTACAATTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 686144
Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT 13641
|| || |||||| || || ||||| | ||| ||| ||| || | | |
Sbjct 686145 TCAATTTCCACAGCATCTTTAATAATTGACGTAACTCGCTCAGAAGACGGCTTTTGTATA 686204
Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684
| ||||||||| |||||||| |||||||||||||| | ||||
Sbjct 686205 ATATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCCT 686247
Score = 100 bits (110), Expect = 3e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428
||||| ||||| | |||| |||| ||||||||||| ||||||||||||| || ||||
Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920
Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACAC 13463
||||||||||| ||||||||| |||||| ||||
Sbjct 685921 TCCATAAAATCAAATGGATTTTCGGACATATACAC 685955
Score = 100 bits (110), Expect = 3e-16
Identities = 135/184 (73%), Gaps = 3/184 (2%)
Strand=Plus/Plus
Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969
|||| ||||| | | || |||||| |||||||| | ||| |||||||| || || |
Sbjct 686639 CCTT-TCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCA 686697
Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC- 14028
||||| ||||||| || || ||||| ||||| | || |||| ||||| |||
Sbjct 686698 CATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCT 686757
Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088
|| |||| || ||| | | |||||||| ||||| |||||| ||||||||||||||
Sbjct 686758 GACTAAA-TCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCT 686816
Query 14089 AATA 14092
||||
Sbjct 686817 AATA 686820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478551314532240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |