Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq467 114 1e-20
>seq467
Length=2555529
Score = 114 bits (126), Expect = 1e-20
Identities = 144/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
|| ||||| | |||||||||||| || || ||| | || || |||||||| || |||||
Sbjct 1364651 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1364710
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTC 43036
||||||| |||||||| | || | ||||||||| || |||| | | |||| ||
Sbjct 1364711 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC-CTGAATTTTAGCCTTT-ACAT 1364768
Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096
| ||| ||||| ||||| || || | |||||||||||||| || || |||||||
Sbjct 1364769 TCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCA 1364828
Query 43097 CAAAAATTTGCATT 43110
| || || ||||||
Sbjct 1364829 CGAATATCTGCATT 1364842
Score = 107 bits (118), Expect = 1e-18
Identities = 143/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||| || || | || || || || ||||| ||| | || |||||||||||||| |||||
Sbjct 1365239 CTCTTTCTGAATGTTATAGTCAGATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCAAA 1365298
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACT 43035
|||||| | |||||| || | || | ||||||||| || |||| | | |||| ||
Sbjct 1365299 AATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTC-CTGAATTTTAGCCTTT-ACA 1365356
Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095
| ||| ||||| ||||| || || | |||||||||||||| || || ||||||
Sbjct 1365357 TTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTC 1365416
Query 43096 ACAAAAATTTGCATT 43110
|| || || ||||||
Sbjct 1365417 ACGAATATCTGCATT 1365431
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
|| ||||| | ||| ||||| || | ||||||| | || |||||||| ||||| |||||
Sbjct 1365468 TCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAAG 1365527
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
|| |||| ||| || || | || | |||||| || || ||| |||| || |
Sbjct 1365528 ATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACATTT 1365587
Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098
||| ||||| ||||| || || | |||||||||||||| || || ||||||||
Sbjct 1365588 TCAATGGTGTCTGACGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACG 1365647
Query 43099 AAAATTTGCATT 43110
|| || ||||||
Sbjct 1365648 AATATCTGCATT 1365659
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| | |||| | || ||||||| ||| || || || | ||||||||| ||
Sbjct 1364159 CCTCCCCTGAGTCGAAGTACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAA 1364218
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| |||||| | || |||| |||||| || || || || |||| ||| ||||| | ||
Sbjct 1364219 AGTGTACGACCATCTTCCAGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGA 1364278
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||||| || || | || || | ||| ||||| ||||| ||
Sbjct 1364279 ATGCCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATAGTGTCAGACGCCTCAACT 1364338
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| | ||||| |||||||| || ||||| ||||||||||||||||||
Sbjct 1364339 TCCAGAGTTATGGTTTTTCCAGTAAGAGTCTTCACAAAAATTTGCATT 1364386
Score = 98.7 bits (108), Expect = 8e-16
Identities = 146/206 (71%), Gaps = 16/206 (8%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
|| ||||| | |||||||||||| || || ||| | || || |||||||| || |||||
Sbjct 1364998 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1365057
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT--------TTCGCTGATC---AACT 43027
||||||| |||||||| | || | ||||||||| ||| || ||| | |
Sbjct 1365058 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTGATGCCTTC-CTTATCCTGGATT 1365116
Query 43028 ----CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCG 43083
|||| || | ||| ||||| ||||| || || | || || || ||||||
Sbjct 1365117 TTAGCTTTAACGTTCTCAATAGTGTCCGATGCCTCAACTTCCAAAGTAATGGTCTTTCCG 1365176
Query 43084 GTTAGAGTTTTCACAAAAATTTGCAT 43109
|| ||||||||||| |||||||||||
Sbjct 1365177 GTAAGAGTTTTCACGAAAATTTGCAT 1365202
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
|| ||||| | |||||||||||| || || ||| | || || |||||||| || |||||
Sbjct 1365924 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1365983
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037
||||||| |||||||| | || | ||||||||| || ||| || |||| || |
Sbjct 1365984 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC-CTGAATTTTGGCTTTAACATT 1366042
Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
||| ||| || || || || || | || || || ||||| || | || || ||
Sbjct 1366043 TTCAATTGTATCTGATGCTTCCACTTCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTAC 1366102
Query 43098 AAAAATTTGCATT 43110
|| || ||||||
Sbjct 1366103 GAAGATCTGCATT 1366115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381340475995428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |