Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq467 114 1e-20 >seq467 Length=2555529 Score = 114 bits (126), Expect = 1e-20 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| || || ||| | || || |||||||| || ||||| Sbjct 1364651 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1364710 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTC 43036 ||||||| |||||||| | || | ||||||||| || |||| | | |||| || Sbjct 1364711 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC-CTGAATTTTAGCCTTT-ACAT 1364768 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| ||||| ||||| || || | |||||||||||||| || || ||||||| Sbjct 1364769 TCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCA 1364828 Query 43097 CAAAAATTTGCATT 43110 | || || |||||| Sbjct 1364829 CGAATATCTGCATT 1364842 Score = 107 bits (118), Expect = 1e-18 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | || || || || ||||| ||| | || |||||||||||||| ||||| Sbjct 1365239 CTCTTTCTGAATGTTATAGTCAGATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCAAA 1365298 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACT 43035 |||||| | |||||| || | || | ||||||||| || |||| | | |||| || Sbjct 1365299 AATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTC-CTGAATTTTAGCCTTT-ACA 1365356 Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 | ||| ||||| ||||| || || | |||||||||||||| || || |||||| Sbjct 1365357 TTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTC 1365416 Query 43096 ACAAAAATTTGCATT 43110 || || || |||||| Sbjct 1365417 ACGAATATCTGCATT 1365431 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| ||||| || | ||||||| | || |||||||| ||||| ||||| Sbjct 1365468 TCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAAG 1365527 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || |||| ||| || || | || | |||||| || || ||| |||| || | Sbjct 1365528 ATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACATTT 1365587 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| ||||| || || | |||||||||||||| || || |||||||| Sbjct 1365588 TCAATGGTGTCTGACGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACG 1365647 Query 43099 AAAATTTGCATT 43110 || || |||||| Sbjct 1365648 AATATCTGCATT 1365659 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | |||| | || ||||||| ||| || || || | ||||||||| || Sbjct 1364159 CCTCCCCTGAGTCGAAGTACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAA 1364218 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||| |||||| || || || || |||| ||| ||||| | || Sbjct 1364219 AGTGTACGACCATCTTCCAGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGA 1364278 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || | || || | ||| ||||| ||||| || Sbjct 1364279 ATGCCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATAGTGTCAGACGCCTCAACT 1364338 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| |||||||| || ||||| |||||||||||||||||| Sbjct 1364339 TCCAGAGTTATGGTTTTTCCAGTAAGAGTCTTCACAAAAATTTGCATT 1364386 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/206 (71%), Gaps = 16/206 (8%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| || || ||| | || || |||||||| || ||||| Sbjct 1364998 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1365057 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT--------TTCGCTGATC---AACT 43027 ||||||| |||||||| | || | ||||||||| ||| || ||| | | Sbjct 1365058 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTGATGCCTTC-CTTATCCTGGATT 1365116 Query 43028 ----CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCG 43083 |||| || | ||| ||||| ||||| || || | || || || |||||| Sbjct 1365117 TTAGCTTTAACGTTCTCAATAGTGTCCGATGCCTCAACTTCCAAAGTAATGGTCTTTCCG 1365176 Query 43084 GTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||||||||| ||||||||||| Sbjct 1365177 GTAAGAGTTTTCACGAAAATTTGCAT 1365202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| || || ||| | || || |||||||| || ||||| Sbjct 1365924 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1365983 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||| |||||||| | || | ||||||||| || ||| || |||| || | Sbjct 1365984 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC-CTGAATTTTGGCTTTAACATT 1366042 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||| || || || || || | || || || ||||| || | || || || Sbjct 1366043 TTCAATTGTATCTGATGCTTCCACTTCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTAC 1366102 Query 43098 AAAAATTTGCATT 43110 || || |||||| Sbjct 1366103 GAAGATCTGCATT 1366115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381340475995428