Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq105 165 1e-35 seq305 116 5e-21 >seq105 Length=615523 Score = 165 bits (182), Expect = 1e-35 Identities = 204/279 (73%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109 |||||||| ||| | ||| ||||| |||||| || | ||| | ||| | | ||| Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462 Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTA 71169 || |||||| ||| | | ||||||||| |||| ||||||||||| ||||| |||| Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402 Query 71170 CGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCA 71229 || || ||||| ||||| || || ||||| | || |||||||||||||||||||| || Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342 Query 71230 GTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATT 71289 || ||||| || ||||| || || | ||| | | |||||| | || ||| | ||| Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282 Query 71290 TTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGT 71328 || |||||||| | | |||| | ||| | ||| | |||| Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGT 157243 Score = 116 bits (128), Expect = 5e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 71932 GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGA 71991 |||||||| |||||| || || |||||| ||| ||||||||||| |||||| ||| Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332 Query 71992 CACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAA 72051 |||||||| | ||| | |||| || |||||||||||||| |||||||||||||| Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272 Query 72052 AGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 | ||| ||||| ||||| | ||||| || || || ||| Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230 Score = 114 bits (126), Expect = 2e-20 Identities = 230/336 (68%), Gaps = 15/336 (4%) Strand=Plus/Minus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||| ||||| ||| || ||| ||||||||||| ||||| ||||| | Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805 Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 ||| |||| ||||| | ||| | | || ||| |||| ||| | || ||||| Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATT--TTTG-TCACCTTTTTAAGTTTTT 156748 Query 71660 GAAAATCAAA-----TCTCCCATCTATT-ACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 ||||||| || | | | ||| ||||||| || | ||||| || |||| || Sbjct 156747 GAAAATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAAT 156688 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 | || || || || |||| || || ||| || | || ||| || || | |||||||| Sbjct 156687 TGCATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTAC 156628 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 ||| || ||||||| ||||| ||||| |||| || || ||| || ||||| | Sbjct 156627 TCTTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCA 156568 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAA 71869 || |||| || || || || | |||| |||||| Sbjct 156567 TATACGGGGTTCCTGTCTCTACTTGAG---CTATAA 156535 Score = 111 bits (122), Expect = 2e-19 Identities = 214/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150 || ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | ||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210 | || | |||| |||||||| |||||||||||||| | |||||||| |||||||| Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG--C 72268 || || || | ||| || | | ||||| ||| ||||| || || || ||| | Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992 Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 | || || || || || | || ||| ||| || || || || || ||| || Sbjct 155991 TACCTCTAGCTCGTATGCAATGTACATT--TAGTCCAATACCACCAGCTGATTTGCTAAT 155934 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 ||||| || | || || |||||||| || || || || ||||| || |||| ||| Sbjct 155933 CAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAAAG 155874 Query 72387 TAGAAAACAGCT 72398 || ||||| || Sbjct 155873 AAGGAAACAACT 155862 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 ||| |||||||| || || ||||| || || || || | || |||| || |||||||| Sbjct 155343 TTTCTTTGTTTCTTTATGAAGATTGGAAACTGCAATGCGTGCAGCTAAAACAGCATAATC 155284 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890 |||||||| ||||| ||||||||| |||| ||||| ||| | || ||||| || || Sbjct 155283 TGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACAGT 155224 Query 72891 TGTTACTCCATTATATATTCCTTGGATAAC 72920 || || ||| ||||| || |||||| Sbjct 155223 GGTGACACCAGAATATAAACCACTGATAAC 155194 >seq305 Length=1407860 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||||||||| | ||||| || || | || || || |||||||| | ||||| Sbjct 686682 TACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCT 686741 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 || | ||||||||| || |||||||||| | | |||||| || || ||||| ||| | Sbjct 686742 GTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAG 686801 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509 ||||||||||| || |||||||| ||| |||| Sbjct 686802 GCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 ||| ||| ||| ||| | ||| ||||| || || ||||| || || ||||| || ||||| Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 |||||| | ||| |||||| | ||||||| || || | |||||||||| ||||||| Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTT 687063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671086633022160