Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq105 165 1e-35
seq305 116 5e-21
>seq105
Length=615523
Score = 165 bits (182), Expect = 1e-35
Identities = 204/279 (73%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109
|||||||| ||| | ||| ||||| |||||| || | ||| | ||| | | |||
Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462
Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTA 71169
|| |||||| ||| | | ||||||||| |||| ||||||||||| ||||| ||||
Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402
Query 71170 CGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCA 71229
|| || ||||| ||||| || || ||||| | || |||||||||||||||||||| ||
Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342
Query 71230 GTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATT 71289
|| ||||| || ||||| || || | ||| | | |||||| | || ||| | |||
Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282
Query 71290 TTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGT 71328
|| |||||||| | | |||| | ||| | ||| | ||||
Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGT 157243
Score = 116 bits (128), Expect = 5e-21
Identities = 123/162 (76%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 71932 GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGA 71991
|||||||| |||||| || || |||||| ||| ||||||||||| |||||| |||
Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332
Query 71992 CACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAA 72051
|||||||| | ||| | |||| || |||||||||||||| ||||||||||||||
Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272
Query 72052 AGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
| ||| ||||| ||||| | ||||| || || || |||
Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230
Score = 114 bits (126), Expect = 2e-20
Identities = 230/336 (68%), Gaps = 15/336 (4%)
Strand=Plus/Minus
Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602
|||| |||||||| ||||| ||| || ||| ||||||||||| ||||| ||||| |
Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805
Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 71659
||| |||| ||||| | ||| | | || ||| |||| ||| | || |||||
Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATT--TTTG-TCACCTTTTTAAGTTTTT 156748
Query 71660 GAAAATCAAA-----TCTCCCATCTATT-ACAAACACGTTCAAGGCAACAGATGCCAGAT 71713
||||||| || | | | ||| ||||||| || | ||||| || |||| ||
Sbjct 156747 GAAAATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAAT 156688
Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773
| || || || || |||| || || ||| || | || ||| || || | ||||||||
Sbjct 156687 TGCATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTAC 156628
Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833
||| || ||||||| ||||| ||||| |||| || || ||| || ||||| |
Sbjct 156627 TCTTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCA 156568
Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAA 71869
|| |||| || || || || | |||| ||||||
Sbjct 156567 TATACGGGGTTCCTGTCTCTACTTGAG---CTATAA 156535
Score = 111 bits (122), Expect = 2e-19
Identities = 214/312 (69%), Gaps = 8/312 (3%)
Strand=Plus/Minus
Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150
|| ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | |||
Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110
Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210
| || | |||| |||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050
Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG--C 72268
|| || || | ||| || | | ||||| ||| ||||| || || || ||| |
Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992
Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326
| || || || || || | || ||| ||| || || || || || ||| ||
Sbjct 155991 TACCTCTAGCTCGTATGCAATGTACATT--TAGTCCAATACCACCAGCTGATTTGCTAAT 155934
Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386
||||| || | || || |||||||| || || || || ||||| || |||| |||
Sbjct 155933 CAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAAAG 155874
Query 72387 TAGAAAACAGCT 72398
|| ||||| ||
Sbjct 155873 AAGGAAACAACT 155862
Score = 95.1 bits (104), Expect = 2e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830
||| |||||||| || || ||||| || || || || | || |||| || ||||||||
Sbjct 155343 TTTCTTTGTTTCTTTATGAAGATTGGAAACTGCAATGCGTGCAGCTAAAACAGCATAATC 155284
Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890
|||||||| ||||| ||||||||| |||| ||||| ||| | || ||||| || ||
Sbjct 155283 TGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACAGT 155224
Query 72891 TGTTACTCCATTATATATTCCTTGGATAAC 72920
|| || ||| ||||| || ||||||
Sbjct 155223 GGTGACACCAGAATATAAACCACTGATAAC 155194
>seq305
Length=1407860
Score = 116 bits (128), Expect = 5e-21
Identities = 118/154 (77%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415
|||||||||||||| | ||||| || || | || || || |||||||| | |||||
Sbjct 686682 TACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCT 686741
Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475
|| | ||||||||| || |||||||||| | | |||||| || || ||||| ||| |
Sbjct 686742 GTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAG 686801
Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509
||||||||||| || |||||||| ||| ||||
Sbjct 686802 GCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835
Score = 93.3 bits (102), Expect = 6e-14
Identities = 92/118 (78%), Gaps = 1/118 (1%)
Strand=Plus/Plus
Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600
||| ||| ||| ||| | ||| ||||| || || ||||| || || ||||| || |||||
Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005
Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658
|||||| | ||| |||||| | ||||||| || || | |||||||||| |||||||
Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTT 687063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671086633022160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |