Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq307 120 2e-22 seq467 116 3e-21 seq321 107 1e-18 >seq307 Length=2169461 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| | ||| ||||| | |||||| ||||| |||||||| ||||||||||| Sbjct 1515442 CCTCCTCGAAGTCTCAAAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAG 1515383 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | |||||| ||||| | || || ||||| || | ||| Sbjct 1515382 AGTGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAGATTAATCGTTGCTGATGAGGGGGA 1515323 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| |||||||| || ||||| ||||||| |||| || || || | ||| || Sbjct 1515322 ATTCCCTCTTTGTCCTGGATCTTTGC-CTTTACATTTTCAATTGTGTCAGAAGCTTCGAC 1515264 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || |||||||| ||||| || || || ||||| |||||||| Sbjct 1515263 TTCCAGAGTGATGGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCAT 1515216 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| | ||||| ||| | |||||||||||| |||||||| ||||| ||||| Sbjct 1515670 CCTCCTCGAAGTCTTAGAACCAGATGAAGGGTGGATTCTTTTTGAATGTTATAATCTGAC 1515611 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| | ||||| | || || || || | || || ||||| ||||| ||| Sbjct 1515610 AGTGTCCTCCCATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGA 1515551 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| || || ||| || ||| | ||||| || || ||| || Sbjct 1515550 ATTCCTTCTTTGTCTTGGATCTTAGCT-TTGACATTCTCTATTGTGTCTGAGGCTTCCAC 1515492 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||| || ||||| ||||| ||||| || || || |||||||| Sbjct 1515491 TTCTAGGGTGATAGTTTTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1515444 Score = 113 bits (124), Expect = 3e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| | ||||| ||| | |||||| ||||| |||||||| ||||| ||||| Sbjct 1509861 CCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGAC 1509802 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | || || || || | || || ||||| ||||| || Sbjct 1509801 AGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGG 1509742 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| |||||||| || || ||| ||| | ||||| ||||| | ||| || Sbjct 1509741 ATTCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCTATCGTATCTGAAGCTTCGACT 1509682 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || | ||| ||||| || ||||| || || || ||||| || |||||||||||| || Sbjct 1509681 TCCAGGGTGATGGTCTTCCCTGTAAGTGTCTTGACAAAGATCTGCATATTTGAAGAT 1509625 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| | ||||| ||| | |||||| ||||| |||||||| ||||| ||||| Sbjct 1510773 CCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGAC 1510714 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | || || || || | || || ||||| ||||| ||| Sbjct 1510713 AGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGA 1510654 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| || || ||| || ||| | ||||| || || ||| || Sbjct 1510653 ATTCCTTCTTTGTCTTGGATCTTAGCT-TTGACATTCTCTATTGTGTCTGAGGCTTCCAC 1510595 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||| || ||||| ||||| ||||| || || || |||||||| Sbjct 1510594 TTCTAGGGTGATAGTTTTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1510547 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| | ||| | |||||| ||||| |||||||| ||||||||||| || | ||| | Sbjct 1515887 TCTCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAGAGTGTCCTCCC 1515828 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | || || || || | || || ||||| || || || ||||| ||||| Sbjct 1515827 ATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGGTATTCCCTCTTT 1515768 Query 15268 GTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 ||| || || ||| || ||| | ||||| || || | ||| || || | ||| | Sbjct 1515767 GTCCTGGATCTTAGCT-TTGACATTCTCTATTGTGTCAGAAGCTTCGACTTCCAGGGTGA 1515709 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||||| ||||| || || || |||||||| Sbjct 1515708 TGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1515672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| || || ||||| || | || | ||||| | || Sbjct 1514727 TGAAGTGTTGATTCTTTTTGAATATTATAATCTGAAAGTGTCCTTCCATCTTCCAGCTGC 1514668 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | || || ||||| || || |||||||||||||| || || || Sbjct 1514667 TTTCCAGCAAAGATTAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGGATCTTA 1514608 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | ||||| ||||| | ||| || || | ||| |||||||| ||||| Sbjct 1514607 GCT-TTGACATTCTCTATCGTATCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGT 1514549 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| Sbjct 1514548 GAGTGTCTTGACAAAGATTTGCAT 1514525 >seq467 Length=2555529 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || |||||||| || ||||||||| || | | | ||||||||||| Sbjct 1364638 ATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTG 1364697 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| ||||| | ||||| | |||||| || ||||| ||||||||||| |||||| Sbjct 1364698 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTT 1364757 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||||||| | || ||||| || || || || ||||| || ||||| || || Sbjct 1364758 AGCCTTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGT 1364817 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 1364818 AAGGGTTTTCACGAATATCTGCAT 1364841 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || |||||||| || ||||||||| || | | | ||||||||||| Sbjct 1365911 ATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTG 1365970 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| ||||| | ||||| | |||||| || ||||| ||||||||||| |||||| Sbjct 1365971 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTT 1366030 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| |||| || ||||| ||| || || | || ||||| || || || Sbjct 1366031 GGCTTTAACATTTTCAATTGTATCTGATGCTTCCACTTCGAGAGTGATGGTCTTTCCAGT 1366090 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||| Sbjct 1366091 CAATGTCTTTACGAAGATCTGCAT 1366114 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| || || || ||||| || || |||||||| || | | | ||||| Sbjct 1364177 ACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCC 1364236 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | || || | || || || |||||| ||||||||||| | Sbjct 1364237 AGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGA 1364296 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || |||| || || || || || || | || |||||||| Sbjct 1364297 ATTTTTGCCTTCACGTTTTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTTTTT 1364356 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || |||||||||||||| Sbjct 1364357 CCAGTAAGAGTCTTCACAAAAATTTGCAT 1364385 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || ||||| || || || | | | ||||| ||||| Sbjct 1365227 ATGGAGTGTCGACTCTTTCTGAATGTTATAGTCAGATAATGTGCGTCCATCTTCCAATTG 1365286 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | ||||| | |||||||| ||||| ||||||||||| |||||| Sbjct 1365287 TTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTT 1365346 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||||||| | || ||||| || || || || ||||| || ||||| || || Sbjct 1365347 AGCCTTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGT 1365406 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 1365407 AAGGGTTTTCACGAATATCTGCAT 1365430 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 16/220 (7%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || |||||||| || ||||||||| || | | | ||||||||||| Sbjct 1364985 ATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTG 1365044 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA-------C 15272 ||| ||||| | ||||| | |||||| || ||||| |||||||||| | | Sbjct 1365045 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTGATGCCTTCC 1365104 Query 15273 AAAT------TTTGCTCTTT-ACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGT 15324 || ||| |||| || | || || || || | || || || || || || Sbjct 1365105 TTATCCTGGATTTTAGCTTTAACGTTCTCAATAGTGTC-CGATGCCTCAACTTCCAAAGT 1365163 Query 15325 AATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || || || |||||||| || |||||||||||| Sbjct 1365164 AATGGTCTTTCCGGTAAGAGTTTTCACGAAAATTTGCATA 1365203 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| || ||||| || || | | | ||||| |||||| Sbjct 1366140 TGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGATAATGTGCGTCCATCTTCCAATTGT 1366199 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 ||||||||| | |||| | ||||||||| ||||| || ||||| || |||||| Sbjct 1366200 TTGCCAGCGAAGATCAGTCTTTGTTGGTCTGGAGGAATACCCTCTTTATCCTGAATTTTA 1366259 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| |||| || || || ||| || || | || ||||| || || || Sbjct 1366260 GCT-TTAACATTTTCAATAGTGTCTGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGT 1366318 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||| Sbjct 1366319 CAATGTCTTTACGAAGATCTGCAT 1366342 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || |||||||| ||||| || || | | | |||||||||||| Sbjct 1366368 TGAAGTGTAGATTCCTTTTGTATATTGTAGTCAGAAAGTGTGCGTCCATCTTCTAATTGT 1366427 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-CACAAATTTT 15279 || |||||| | ||||| | || || || ||| || || ||||| | | | |||| Sbjct 1366428 TTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGGATGCCCTCTTTATCCTGGATTTTT 1366487 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || ||||| || || || || | ||| |||||||| || || Sbjct 1366488 GCT-TTAACATTCTCGATGGTGTCTGATGCCTCAACCTCGAGGGTTATGGTTTTTCCCGT 1366546 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| ||||| ||||| Sbjct 1366547 CAATGTCTTTACGAAAATCTGCAT 1366570 >seq321 Length=1097274 Score = 107 bits (118), Expect = 1e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 |||||||||||||| |||||| | || | ||| ||||| || ||||||||||||||| Sbjct 785306 TCTTCTAATTGTTTTCCAGCGAAAATTAGACGCTGTTGATCAGGTGGAATTCCTTCTTTA 785365 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| ||| |||||| |||| |||||||| |||||| || | || || Sbjct 785366 TCTTGAATTTTAGCT-TTTACATTTTCGATGGTATCAGACGCTTCTACCTCGAGCGTGAT 785424 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||| |||||| || || || ||||| Sbjct 785425 AGTTTTGCCCGTCAAAGTTTTCACGAATATCTGCAT 785460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362151541506306