Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq467 96.9 2e-15 seq307 91.5 9e-14 seq459 84.2 1e-11 >seq467 Length=2555529 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || |||||||| ||||| |||||||| | | || || ||||||||||| ||| Sbjct 1365690 GTTGATTCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCA 1365749 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289 ||| ||||| | |||||||| | || || ||||| || || | | | || | Sbjct 1365750 GCAAAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGC---T 1365806 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || ||| ||| || ||| | | ||| |||| ||||| |||||||| ||||| Sbjct 1365807 TTCACGTTTTCAATGGTATCGGACGCCTCAACTTCCAATGTTATTGTTTTTCCAGTAAGT 1365866 Query 33350 GTTTTTACGAAAATTTGCAT 33369 ||||||||||| || ||||| Sbjct 1365867 GTTTTTACGAAGATCTGCAT 1365886 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || ||||| | || || ||||| || |||||||||||||| | | | || ||| Sbjct 1364177 ACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCC 1364236 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| || ||| || ||||| | ||||| || | || ||||||||||| || | Sbjct 1364237 AGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGA 1364296 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 || |||| | || ||| ||| ||||| | | ||| ||||||||||| ||| Sbjct 1364297 ATTTTTGCCT---TCACGTTTTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTT 1364353 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| |||||||| || || ||||||||||| Sbjct 1364354 TTTCCAGTAAGAGTCTTCACAAAAATTTGCAT 1364385 Score = 91.5 bits (100), Expect = 9e-14 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | |||||||||||| || || || || ||||| || || || || |||||||| Sbjct 1365227 ATGGAGTGTCGACTCTTTCTGAATGTTATAGTCAGATAATGTGCGTCCATCTTCCAATTG 1365286 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAA---T 33282 || ||| ||| || || | || ||||| | || || |||||||| || || | Sbjct 1365287 TTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTT 1365346 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 ||| ||||| | | ||| ||||| | | ||| |||| ||||| |||||||| Sbjct 1365347 AGCC---TTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCC 1365403 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| ||||| || ||||| Sbjct 1365404 AGTAAGGGTTTTCACGAATATCTGCAT 1365430 Score = 91.5 bits (100), Expect = 9e-14 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || |||||||| ||||| |||||||| | | || || ||||||||||| ||| Sbjct 1365462 GTTGATTCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCA 1365521 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289 ||| ||||| | |||||||| | || || ||||| || || | | | || | Sbjct 1365522 GCAAAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGC---T 1365578 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || ||| ||| ||||| | | ||| |||| ||||| |||||||| ||||| Sbjct 1365579 TTCACATTTTCAATGGTGTCTGACGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGG 1365638 Query 33350 GTTTTTACGAAAATTTGCAT 33369 ||||| ||||| || ||||| Sbjct 1365639 GTTTTCACGAATATCTGCAT 1365658 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || |||||||| ||||||||||| || || || || || || ||||| || ||| Sbjct 1364645 GTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCA 1364704 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGT 33289 ||| || || | ||| || || | || || |||||||| || || | ||| Sbjct 1364705 GCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTAGCC--- 1364761 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 ||||| | | ||| ||||| | | ||| |||| ||||| |||||||| ||||| Sbjct 1364762 TTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGG 1364821 Query 33350 GTTTTTACGAAAATTTGCAT 33369 ||||| ||||| || ||||| Sbjct 1364822 GTTTTCACGAATATCTGCAT 1364841 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||| |||||||| || || ||||| ||||| | || | || || || || Sbjct 1364410 ATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCAGATAGTGTGCGCCCATCTTCTAACTG 1364469 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAAT 33282 ||| ||| || || || | ||||||||| | ||| ||||||||||| || | | | Sbjct 1364470 CTTACCAGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCTTTATCCTGGATTTT 1364529 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 ||| || || | | ||| ||||| | | ||| |||| ||| || || ||||| Sbjct 1364530 AGCC---TTAACGTTCTCAATAGTGTCTGATGCCTCAACTTCCAAAGTAATGGTCTTTCC 1364586 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||||||| || || || ||||| Sbjct 1364587 AGTAAGAGTTTTCACAAAGATCTGCAT 1364613 >seq307 Length=2169461 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||| || |||||||| || || ||||| |||| | | || || Sbjct 1510299 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510240 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 | ||||| || ||| ||||| ||||||||||| | || || || ||||| || | Sbjct 1510239 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1510180 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | ||||| ||||| ||| ||| ||||| | || || ||||| || || ||| Sbjct 1510179 ATCTTCGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTT 1510123 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || ||||| || ||||| |||||||| Sbjct 1510122 TTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510091 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||| || |||||||| || || ||||| |||| | | || || Sbjct 1510527 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510468 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 | ||||| || ||| ||||| ||||||||||| | || || || ||||| || | Sbjct 1510467 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1510408 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | ||||| ||||| ||| ||| ||||| | || || ||||| || || ||| Sbjct 1510407 ATCTTCGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTT 1510351 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || ||||| || ||||| |||||||| Sbjct 1510350 TTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510319 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||| || |||||||| || || ||||| |||| | | || || Sbjct 1514961 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1514902 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 | ||||| || ||| ||||| ||||||||||| | || || || ||||| || | Sbjct 1514901 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1514842 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | ||||| ||||| ||| ||| ||||| | || || ||||| || || ||| Sbjct 1514841 ATCTTCGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTT 1514785 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || ||||| || ||||| |||||||| Sbjct 1514784 TTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514753 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||| || |||||||| || || ||||| |||| | | || || Sbjct 1510071 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510012 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 | ||||| || ||| ||||| ||||||||||| | || || || ||||| || | Sbjct 1510011 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1509952 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | ||||| ||||| ||| ||| ||||| | || || |||||||| || ||| Sbjct 1509951 ATCTTCGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGAGTGATGGTT 1509895 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| |||||||| Sbjct 1509894 TTCCCTGTGAGTGTCTTCACGAAGATTTGCAT 1509863 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| |||| ||| | ||| || |||||||| || ||||||||||| | | | || Sbjct 1515428 CAAAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAGAGTGTCCTTCCATC 1515369 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | ||| || ||| ||| ||||| |||||||| | | ||| || || ||||| || Sbjct 1515368 TTCAAGTTGTTTCCCAGCAAAGATTAATCGTTGCTGATGAGGGGGAATTCCCTCTTTGTC 1515309 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| ||| ||||| | || || |||||||| || Sbjct 1515308 CTGGATCTTTGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGAGTGAT 1515252 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || || || || || |||||||| Sbjct 1515251 GGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCAT 1515216 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/217 (68%), Gaps = 16/217 (7%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||| || |||||||| || ||||||||||| |||| ||| ||| Sbjct 1515880 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGA------GAGT--GTCCTCC 1515829 Query 33221 AAT--------TGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTT 33272 || |||||||| ||| ||||| |||||||| || | ||||| || |||| Sbjct 1515828 CATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGGTATTCCCTCTT 1515769 Query 33273 TTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | || ||| ||| || | | || ||||| | || || ||||| || | Sbjct 1515768 TGTCCTGGATCTTAGCTTTGACATTCTCTATTGTGTCAGAAGCTTCGACTTCCAGGGTGA 1515709 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | |||||||| || ||||| || ||||| |||||||| Sbjct 1515708 TGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1515672 >seq459 Length=558815 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/130 (75%), Gaps = 8/130 (6%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| || || || ||||||||||| || || ||||| ||||| ||||| ||| Sbjct 439377 CCACCTCTTAAACGTAAGACTAAATGCAATGTAGATTCCTTTTGAATATTATAATCTGAC 439436 Query 33203 AAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | ||||| || ||||||||||||||| ||| ||||| | ||| ||||| | Sbjct 439437 A----GAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTGTTGGTCAGG 439492 Query 33259 GGGTATGCCT 33268 || || ||| Sbjct 439493 TGGAATTCCT 439502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318753255950868