Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq467 96.9 2e-15
seq307 91.5 9e-14
seq459 84.2 1e-11
>seq467
Length=2555529
Score = 96.9 bits (106), Expect = 2e-15
Identities = 142/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232
|| || |||||||| ||||| |||||||| | | || || ||||||||||| |||
Sbjct 1365690 GTTGATTCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCA 1365749
Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289
||| ||||| | |||||||| | || || ||||| || || | | | || |
Sbjct 1365750 GCAAAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGC---T 1365806
Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349
|| || ||| ||| || ||| | | ||| |||| ||||| |||||||| |||||
Sbjct 1365807 TTCACGTTTTCAATGGTATCGGACGCCTCAACTTCCAATGTTATTGTTTTTCCAGTAAGT 1365866
Query 33350 GTTTTTACGAAAATTTGCAT 33369
||||||||||| || |||||
Sbjct 1365867 GTTTTTACGAAGATCTGCAT 1365886
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|| ||||| | || || ||||| || |||||||||||||| | | | || |||
Sbjct 1364177 ACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCC 1364236
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| ||| || ||| || ||||| | ||||| || | || ||||||||||| || |
Sbjct 1364237 AGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGA 1364296
Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
|| |||| | || ||| ||| ||||| | | ||| ||||||||||| |||
Sbjct 1364297 ATTTTTGCCT---TCACGTTTTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTT 1364353
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| |||||||| || || |||||||||||
Sbjct 1364354 TTTCCAGTAAGAGTCTTCACAAAAATTTGCAT 1364385
Score = 91.5 bits (100), Expect = 9e-14
Identities = 145/207 (70%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225
||| | |||||||||||| || || || || ||||| || || || || ||||||||
Sbjct 1365227 ATGGAGTGTCGACTCTTTCTGAATGTTATAGTCAGATAATGTGCGTCCATCTTCCAATTG 1365286
Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAA---T 33282
|| ||| ||| || || | || ||||| | || || |||||||| || || |
Sbjct 1365287 TTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTT 1365346
Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342
||| ||||| | | ||| ||||| | | ||| |||| ||||| ||||||||
Sbjct 1365347 AGCC---TTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCC 1365403
Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| ||||| ||||| || |||||
Sbjct 1365404 AGTAAGGGTTTTCACGAATATCTGCAT 1365430
Score = 91.5 bits (100), Expect = 9e-14
Identities = 141/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232
|| || |||||||| ||||| |||||||| | | || || ||||||||||| |||
Sbjct 1365462 GTTGATTCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCA 1365521
Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289
||| ||||| | |||||||| | || || ||||| || || | | | || |
Sbjct 1365522 GCAAAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGC---T 1365578
Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349
|| || ||| ||| ||||| | | ||| |||| ||||| |||||||| |||||
Sbjct 1365579 TTCACATTTTCAATGGTGTCTGACGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGG 1365638
Query 33350 GTTTTTACGAAAATTTGCAT 33369
||||| ||||| || |||||
Sbjct 1365639 GTTTTCACGAATATCTGCAT 1365658
Score = 87.8 bits (96), Expect = 1e-12
Identities = 140/200 (70%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232
|| || |||||||| ||||||||||| || || || || || || ||||| || |||
Sbjct 1364645 GTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCA 1364704
Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGT 33289
||| || || | ||| || || | || || |||||||| || || | |||
Sbjct 1364705 GCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTAGCC--- 1364761
Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349
||||| | | ||| ||||| | | ||| |||| ||||| |||||||| |||||
Sbjct 1364762 TTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGG 1364821
Query 33350 GTTTTTACGAAAATTTGCAT 33369
||||| ||||| || |||||
Sbjct 1364822 GTTTTCACGAATATCTGCAT 1364841
Score = 82.4 bits (90), Expect = 5e-11
Identities = 143/207 (69%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225
||| | ||| |||||||| || || ||||| ||||| | || | || || || ||
Sbjct 1364410 ATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCAGATAGTGTGCGCCCATCTTCTAACTG 1364469
Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAAT 33282
||| ||| || || || | ||||||||| | ||| ||||||||||| || | | |
Sbjct 1364470 CTTACCAGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCTTTATCCTGGATTTT 1364529
Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342
||| || || | | ||| ||||| | | ||| |||| ||| || || |||||
Sbjct 1364530 AGCC---TTAACGTTCTCAATAGTGTCTGATGCCTCAACTTCCAAAGTAATGGTCTTTCC 1364586
Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||||||||| || || || |||||
Sbjct 1364587 AGTAAGAGTTTTCACAAAGATCTGCAT 1364613
>seq307
Length=2169461
Score = 91.5 bits (100), Expect = 9e-14
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||| ||| | ||| || |||||||| || || ||||| |||| | | || ||
Sbjct 1510299 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510240
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277
| ||||| || ||| ||||| ||||||||||| | || || || ||||| || |
Sbjct 1510239 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1510180
Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
| ||||| ||||| ||| ||| ||||| | || || ||||| || || |||
Sbjct 1510179 ATCTTCGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTT 1510123
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || ||||| || ||||| ||||||||
Sbjct 1510122 TTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510091
Score = 91.5 bits (100), Expect = 9e-14
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||| ||| | ||| || |||||||| || || ||||| |||| | | || ||
Sbjct 1510527 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510468
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277
| ||||| || ||| ||||| ||||||||||| | || || || ||||| || |
Sbjct 1510467 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1510408
Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
| ||||| ||||| ||| ||| ||||| | || || ||||| || || |||
Sbjct 1510407 ATCTTCGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTT 1510351
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || ||||| || ||||| ||||||||
Sbjct 1510350 TTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510319
Score = 91.5 bits (100), Expect = 9e-14
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||| ||| | ||| || |||||||| || || ||||| |||| | | || ||
Sbjct 1514961 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1514902
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277
| ||||| || ||| ||||| ||||||||||| | || || || ||||| || |
Sbjct 1514901 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1514842
Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
| ||||| ||||| ||| ||| ||||| | || || ||||| || || |||
Sbjct 1514841 ATCTTCGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTT 1514785
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || ||||| || ||||| ||||||||
Sbjct 1514784 TTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514753
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/212 (69%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||| ||| | ||| || |||||||| || || ||||| |||| | | || ||
Sbjct 1510071 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510012
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277
| ||||| || ||| ||||| ||||||||||| | || || || ||||| || |
Sbjct 1510011 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1509952
Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
| ||||| ||||| ||| ||| ||||| | || || |||||||| || |||
Sbjct 1509951 ATCTTCGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGAGTGATGGTT 1509895
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || || ||||| ||||||||
Sbjct 1509894 TTCCCTGTGAGTGTCTTCACGAAGATTTGCAT 1509863
Score = 84.2 bits (92), Expect = 1e-11
Identities = 149/216 (69%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
||| |||| ||| | ||| || |||||||| || ||||||||||| | | | ||
Sbjct 1515428 CAAAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAGAGTGTCCTTCCATC 1515369
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
|| | ||| || ||| ||| ||||| |||||||| | | ||| || || ||||| ||
Sbjct 1515368 TTCAAGTTGTTTCCCAGCAAAGATTAATCGTTGCTGATGAGGGGGAATTCCCTCTTTGTC 1515309
Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
| | | ||| ||||| ||| ||| ||||| | || || |||||||| ||
Sbjct 1515308 CTGGATCTTTGCC---TTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGAGTGAT 1515252
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || || || || || || || ||||||||
Sbjct 1515251 GGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCAT 1515216
Score = 82.4 bits (90), Expect = 5e-11
Identities = 148/217 (68%), Gaps = 16/217 (7%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||| ||| | ||| || |||||||| || ||||||||||| |||| ||| |||
Sbjct 1515880 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGA------GAGT--GTCCTCC 1515829
Query 33221 AAT--------TGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTT 33272
|| |||||||| ||| ||||| |||||||| || | ||||| || ||||
Sbjct 1515828 CATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGGTATTCCCTCTT 1515769
Query 33273 TTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332
| || ||| ||| || | | || ||||| | || || ||||| || |
Sbjct 1515768 TGTCCTGGATCTTAGCTTTGACATTCTCTATTGTGTCAGAAGCTTCGACTTCCAGGGTGA 1515709
Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
| |||||||| || ||||| || ||||| ||||||||
Sbjct 1515708 TGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1515672
>seq459
Length=558815
Score = 84.2 bits (92), Expect = 1e-11
Identities = 97/130 (75%), Gaps = 8/130 (6%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| |||||||| || || || ||||||||||| || || ||||| ||||| ||||| |||
Sbjct 439377 CCACCTCTTAAACGTAAGACTAAATGCAATGTAGATTCCTTTTGAATATTATAATCTGAC 439436
Query 33203 AAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258
| ||||| || ||||||||||||||| ||| ||||| | ||| ||||| |
Sbjct 439437 A----GAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTGTTGGTCAGG 439492
Query 33259 GGGTATGCCT 33268
|| || |||
Sbjct 439493 TGGAATTCCT 439502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318753255950868
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