Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq307 107 1e-18 seq467 102 6e-17 seq321 86.0 4e-12 >seq307 Length=2169461 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||||| |||| ||| || ||| ||||||||||| |||||||| Sbjct 1515670 CCTCCTCGAAGTCTTAGAACCAGATGAAGGGTGGATTCTTTTTGAATGTTATAATCTGAC 1515611 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | | |||| || | || ||||||||||| || || ||||||||||| |||| Sbjct 1515610 AGTGTCCTCCCATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGA 1515551 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| || || |||||| | | | || |||| | ||||| Sbjct 1515550 ATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACT 1515491 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||||||| || |||||||| Sbjct 1515490 TCTAGGGTGATAGTTTTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1515444 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||||| |||| ||| || ||| ||||||||||| |||||||| | Sbjct 1510773 CCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATC-TGA 1510715 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | || | || ||| || | || || |||||||| || || ||||||||||| |||| Sbjct 1510714 CAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGG 1510655 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| || || |||||| | | | || |||| | ||||| Sbjct 1510654 AATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCAC 1510595 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||||||| || |||||||| Sbjct 1510594 TTCTAGGGTGATAGTTTTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1510547 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||| | ||| | || || || |||||||||||||||||||| | Sbjct 1514751 CCTCCTCGAAGTCTCAGCACAAGGTGAAGTGTTGATTCTTTTTGAATATTATAATC-TGA 1514693 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || | || ||| |||| || ||||| ||||| || || |||||||| || |||| Sbjct 1514692 AAGTGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAAGATTAATCGTTGCTGATCAGGAGG 1514633 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| || || |||||| | | | ||||||| | || || Sbjct 1514632 AATTCCTTCTTTATCTTGGATCTTAGCTTTGACATTCTCTATCGTATCTGAAGCTTCGAC 1514573 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||| ||||| |||||||| Sbjct 1514572 TTCCAGGGTGATGGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCAT 1514525 >seq467 Length=2555529 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| |||||| ||| || |||| || |||||||| || ||||| Sbjct 1365924 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1365983 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | ||| || || |||| | ||||||||| || |||||| ||| || | Sbjct 1365984 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTGGCTTTAACATTT 1366043 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||||| | ||||| |||| || || || || || || || ||||| || Sbjct 1366044 TCAATTGTATCTGATGCTTCCACTTCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTACG 1366103 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 1366104 AAGATCTGCAT 1366114 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| || | || | || ||||| || || ||||| |||||||| ||||| Sbjct 1364159 CCTCCCCTGAGTCGAAGTACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAA 1364218 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| |||| |||| |||||| || || || || || | ||||| || | || Sbjct 1364219 AGTGTACGACCATCTTCCAGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGA 1364278 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| ||||||| || || | ||| ||| || | || ||| || Sbjct 1364279 ATGCCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATAGTGTCAGACGCCTCAACT 1364338 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | |||||||||||| |||||||| Sbjct 1364339 TCCAGAGTTATGGTTTTTCCAGTAAGAGTCTTCACAAAAATTTGCAT 1364385 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| ||||| ||||| || |||| || |||| ||||||||||| || ||||| Sbjct 1365239 CTCTTTCTGAATGTTATAGTCAGATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCAAA 1365298 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| || ||||| |||| | ||||||||| || |||||| || || | Sbjct 1365299 AATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTTAGCCTTTACATT 1365358 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || || | | ||| || || | || || ||||| || || | || ||||| Sbjct 1365359 CTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCAC 1365418 Query 44110 AAATATTTGCAT 44121 ||||| ||||| Sbjct 1365419 GAATATCTGCAT 1365430 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| |||||| ||| || |||| || |||||||| || ||||| Sbjct 1364651 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1364710 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | ||| || || |||| | ||||||||| || |||||| || || | Sbjct 1364711 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTAGCCTTTACATTC 1364770 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | | ||| || || | || || ||||| || || | || ||||| Sbjct 1364771 TCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACG 1364830 Query 44111 AATATTTGCAT 44121 ||||| ||||| Sbjct 1364831 AATATCTGCAT 1364841 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||| ||||||||||| | | ||| |||| |||||||| || || ||||| Sbjct 1365468 TCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAAG 1365527 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || | |||||||| |||| | |||||| || || ||||| ||| || | Sbjct 1365528 ATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACATTT 1365587 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || |||| || ||| || || | || || ||||| || || | || ||||| Sbjct 1365588 TCAATGGTGTCTGACGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACG 1365647 Query 44111 AATATTTGCAT 44121 ||||| ||||| Sbjct 1365648 AATATCTGCAT 1365658 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||| ||||||||||| | | ||| |||| |||||||| || || ||||| Sbjct 1365696 TCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAAG 1365755 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || | |||||||| |||| | |||||| || || ||||| ||| || | Sbjct 1365756 ATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACGTTT 1365815 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | || ||| || || | || |||||||| || || | || || || Sbjct 1365816 TCAATGGTATCGGACGCCTCAACTTCCAATGTTATTGTTTTTCCAGTAAGTGTTTTTACG 1365875 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 1365876 AAGATCTGCAT 1365886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || ||||||||||| || || |||| || |||| ||||||||||| || || || Sbjct 1366152 TCCTTTTGAATATTGTAGTCAGATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAG 1366211 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 |||| | ||| ||||| |||| | ||| |||||||| |||||| ||| || | Sbjct 1366212 ATCAGTCTTTGTTGGTCTGGAGGAATACCCTCTTTATCCTGAATTTTAGCTTTAACATTT 1366271 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||| |||| | || || || | || || || || || || || ||||| || Sbjct 1366272 TCAATAGTGTCTGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTTACG 1366331 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 1366332 AAGATCTGCAT 1366342 >seq321 Length=1097274 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||| || ||||||||||| | ||| |||| || ||||||||||| || || | Sbjct 785271 CTTTCTGGATATTATAATCAGAGAGGGTACGTCCATCTTCTAATTGTTTTCCAGCGAAAA 785330 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 | | || || || || | || | |||||||||||| |||||| ||| || | Sbjct 785331 TTAGACGCTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCTTTTACATTTT 785390 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 | | ||||| | || || || |||| ||| || ||||| || || ||||| ||||| | Sbjct 785391 CGATGGTATCAGACGCTTCTACCTCGAGCGTGATAGTTTTGCCCGTCAAAGTTTTCACGA 785450 Query 44112 ATATTTGCAT 44121 |||| ||||| Sbjct 785451 ATATCTGCAT 785460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354750506743368