Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq467 89.7 4e-13 seq307 86.0 5e-12 >seq467 Length=2555529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 || ||||| || ||||||||||| || || |||||||| | ||| | || ||||| Sbjct 1364177 ACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAG--AAAGTGTACGACCATCTT 1364234 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 ||| |||||| || || | || | ||||| ||||| || | |||||||||||| Sbjct 1364235 CCAGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTT 1364294 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||||||| ||||| | ||| || || | || ||||| || ||||||| Sbjct 1364295 GAATTTTTGCCTTCACGTTTTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTTT 1364354 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || || | || || ||||||||||||||| Sbjct 1364355 TTCCAGTAAGAGTCTTCACAAAAATTTGCATT 1364386 >seq307 Length=2169461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | ||||| |||| ||| ||||| ||||||||||| ||||||||||| Sbjct 1515444 TTCCTCCTCGAAGTCTCAAAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAG 1515385 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | || | |||||| | |||||| || ||| | || | | || |||| || Sbjct 1515384 AGAGTGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAGATTAATCGTTGCTGATGAGGGG 1515325 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| || ||| || || | ||| | || || ||| Sbjct 1515324 GAATTCCCTCTTTGTCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGA 1515265 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| || |||||||| || || | || |||||||| ||||||||| Sbjct 1515264 CTTCCAGAGTGATGGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCATT 1515215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419555157436746