Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq305 102 7e-17 >seq305 Length=1407860 Score = 102 bits (112), Expect = 7e-17 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| || ||||| || ||||| |||||||||||||| | ||||||||| |||| ||| Sbjct 686657 AATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTG 686716 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT-CGGAGTAAAATCTTTCTGCTA 13538 ||| ||||| ||||| | ||||||| || ||| |||| | || | ||||| ||| | | Sbjct 686717 GAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACT-AAATCGTTCAACAA 686775 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 ||||| || || || || ||| || |||||||| || Sbjct 686776 GATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGC 686815 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| ||||| | |||| |||| ||||||||||||||||| ||||| || ||||||| Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||||||||| || ||||||| Sbjct 685921 TCCATAAAATCAAATGGATTTT 685942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430949487220932