Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq305 102 7e-17
>seq305
Length=1407860
Score = 102 bits (112), Expect = 7e-17
Identities = 120/160 (75%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
||| || ||||| || ||||| |||||||||||||| | ||||||||| |||| |||
Sbjct 686657 AATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTG 686716
Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT-CGGAGTAAAATCTTTCTGCTA 13538
||| ||||| ||||| | ||||||| || ||| |||| | || | ||||| ||| | |
Sbjct 686717 GAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACT-AAATCGTTCAACAA 686775
Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578
||||| || || || || ||| || |||||||| ||
Sbjct 686776 GATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGC 686815
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||| ||||| | |||| |||| ||||||||||||||||| ||||| || |||||||
Sbjct 685861 TTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGC 685920
Query 12920 TCCATAAAATCGAAAGGATTTT 12941
||||||||||| || |||||||
Sbjct 685921 TCCATAAAATCAAATGGATTTT 685942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430949487220932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |