Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq388 286 2e-72 seq5596 136 2e-27 seq6046 87.8 1e-12 >seq388 Length=1669248 Score = 286 bits (316), Expect = 2e-72 Identities = 383/527 (73%), Gaps = 12/527 (2%) Strand=Plus/Plus Query 3617 AATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATG 3676 ||||| ||| | |||||||| || ||||| ||||||||||||||||||||||||||| | Sbjct 685908 AATGAGTTGTTGTATTTTGCAGATGTATGTGCTGGTCCAGGTGGTTTCAGTGAATATGTT 685967 Query 3677 TTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaa----aa 3732 |||||||||| |||||| || ||||||| |||| | || || |||||| || Sbjct 685968 TTATGGAGAAGAAAATGGCATGCAAAAGGTTTTGGTCTTACTTT----GAAAAATGAGAA 686023 Query 3733 TGATTTTCAACTGAACAGATTTT-ACG-ATAACTTTTCGGAAACTTTACACCCGTATTAT 3790 ||||||| || | | | |||||| | | | || || || |||| || || || |||||| Sbjct 686024 TGATTTTAAATT-AGCTGATTTTTATGCAGGACCTTGCG-AAACATTTCATCCCTATTAT 686081 Query 3791 GGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATG 3850 || || | ||||| || | || || | || || | | ||| | || | Sbjct 686082 GGACCAAAAGATAATGGTGATGTTTATGATCCTTGTAACCAAGATGCTTTCAGAGATCTC 686141 Query 3851 ATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCG 3910 || |||| | |||| | || ||||| |||||||| |||||| | || || || || || Sbjct 686142 ATAATGACACATACACATGGCAAAGGAGTACATTTCATGATGTCGGATGGAGGATTTTCA 686201 Query 3911 GTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGT 3970 || || |||||||||||||| ||||| || | |||||| || ||||| | ||||||||| Sbjct 686202 GTAGAAGGTCAAGAAAATATACAAGAGATTCTCTCGAAACAGTTGTATCTCTGTCAATGT 686261 Query 3971 TTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATA 4030 |||||||| || ||||| |||||| | ||||||| ||||| || || || || | Sbjct 686262 TTAATTGCCTTAATGATTATACGAGTAAAAGGTCATTTTGTTACAAAGTTATTTGACCTT 686321 Query 4031 TTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGT 4090 ||||| || ||||| || |||||||| || || |||||| | | ||| | |||||| Sbjct 686322 TTTACGCCCTTTAGCGCAGGTTTAGTTTACTTAATGTATCGTTGTTTCGAAGAAATTTGT 686381 Query 4091 ATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 |||||||| || |||| || | || || ||||| ||| | ||||| Sbjct 686382 ATTTTCAAGCCGAATTCTTCTAGGCCAGCAAATTCAGAACGTTATTT 686428 Score = 226 bits (250), Expect = 2e-54 Identities = 499/742 (67%), Gaps = 11/742 (1%) Strand=Plus/Plus Query 3410 TTTTGTGATAAAAATATTGTACATAATATATTGCATTTCAAATCTATCTTCGACAATATC 3469 ||||||||| | ||||| | ||||| || ||||| ||||| | || |||| || Sbjct 2256 TTTTGTGATGAGAATATGCTTAGAAATATTTTACATTTAAAATCAACATTGTACAAAATA 2315 Query 3470 GATaaaaaaaaaTTATGTGACGCCAGGGCAAGATCCAACCCATTCGAATTAGTGGGCAAA 3529 || | | | ||||| | | || || | | || | || ||| | | |||| Sbjct 2316 CATGATGACA---TATGTCATGTATGGACACGCTGTAATACTTTTGAAACAATCCGCAAT 2372 Query 3530 GCtttttttATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTC 3589 || || ||| | || | |||||| ||||||||||| || ||| | ||| || || Sbjct 2373 GCATTCTTTTTAAATCGTTCTGCTGTTAAAATGGCAAATATGGATAAAGCATGTAACTTT 2432 Query 3590 GTATTTACACGAT-TGAATGATGGATCAA--ATGAATTGATATATTTTGCTGACGTATGC 3646 | ||||| | || | | | || || |||| ||| |||||||||| || ||||| Sbjct 2433 ATGTTTACCAAACCTGCAGGTTTGAAGAACAATGAGTTGCTATATTTTGCAGATGTATGT 2492 Query 3647 GCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGT 3706 ||||| |||||||||||||||||||| | | ||||||||||||||| || ||||| Sbjct 2493 GCTGGCCCAGGTGGTTTCAGTGAATACGTTCTGTGGAGAAAGAAATGGCATGCAAAAGGA 2552 Query 3707 TATGGTATGACGTTACGCGaaaaaaaTGATTTTCAACTGAACAGATTTTACGATAACTTT 3766 | |||| | || ||| | | | |||| ||| || | || | |||| | | | | Sbjct 2553 TTTGGTCTTACTTTAAAAAATATAGATGACTTTGAATTAAATAAATTTCAAGCTGGTCCT 2612 Query 3767 TCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAA 3826 | ||||| || || || |||||||| || |||||| |||| | || | Sbjct 2613 TGCGAAACATTTCATCCATATTATGGACCAAAAGGTGATGGTGATATTTTTGATCCCAGT 2672 Query 3827 AATCAGAAAGGTTTTTGTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTT 3886 ||||| |||| ||| | | | || |||| ||||| | || || || |||||||| Sbjct 2673 AATCAAAAAGCTTTCAGAAATCTTATAATGACTCATACCCATGGTAAGGGAGTACATTTC 2732 Query 3887 ATGATGGCTGACGGTGGGTTCTCGGTT---GAGGGTCAAGAAAATATGCAAGAAATGTTA 3943 |||||| |||| |||| || || ||||||||| ||| | | ||||| || || Sbjct 2733 ATGATGTCTGATGGTGCATTTGAAATTGAAGAGGGTCAAAAAAGTTTACAAGAGAT-TTT 2791 Query 3944 TCGAAAA-AGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGG 4002 || |||| | || ||| | ||||| ||| || | || |||||| | || || || || Sbjct 2792 TCTAAAACAAATATATCTCTGTCAGTGTCTAGTAGCTTTGATGGTTGTAAGAGAGGGAGG 2851 Query 4003 TCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTT 4062 |||| ||| | || | || || | ||||||||||||||||| || ||| ||| | Sbjct 2852 ACATTTTGTCACAAACATATTTGACCTTTTTACACCTTTTAGTGCAGGCTTAACATATCT 2911 Query 4063 GATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAA 4122 |||||| | ||| | ||||||||||| |||||| |||| || ||||| || || Sbjct 2912 AATGTATCTTTGCTTTGAAGAAATTTGTATTTTAAAACCAAATTCTTCTCGACCAGCAAA 2971 Query 4123 TTCTGAAAGATATTTGGTGTGT 4144 ||| || ||| |||| | ||| Sbjct 2972 TTCAGAGCGATTTTTGATATGT 2993 >seq5596 Length=417 Score = 136 bits (150), Expect = 2e-27 Identities = 245/356 (69%), Gaps = 3/356 (1%) Strand=Plus/Minus Query 3550 TGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTTACACGAT-TGAATG 3608 |||||| ||||||||||| || ||| | ||| || || | ||||| | || | | Sbjct 379 TGCTGTTAAAATGGCAAATATGGATAAAGCATGTAACTTTATGTTTACCAAACCTGCAGG 320 Query 3609 ATGGATCAA--ATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAG 3666 | || || |||| ||| |||||||||| || ||||| ||||| |||||||||||||| Sbjct 319 TTTGAAGAACAATGAGTTGCTATATTTTGCAGATGTATGTGCTGGCCCAGGTGGTTTCAG 260 Query 3667 TGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGa 3726 |||||| | | ||||||||||||||| || ||||| | |||| | || ||| | Sbjct 259 TGAATACGTTCTGTGGAGAAAGAAATGGCATGCAAAAGGATTTGGTCTTACTTTAAAAAA 200 Query 3727 aaaaaaTGATTTTCAACTGAACAGATTTTACGATAACTTTTCGGAAACTTTACACCCGTA 3786 | | |||| ||| || | || | |||| | | | || ||||| || || || || Sbjct 199 TATAGATGACTTTGAATTAAATAAATTTCAAGCTGGTCCTTGCGAAACATTTCATCCATA 140 Query 3787 TTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGA 3846 |||||| || |||||| |||| | || | ||||| |||| ||| | | Sbjct 139 TTATGGACCAAAAGGTGATGGTGATATTTTTGATCCCAGTAATCAAAAAGCTTTCAGAAA 80 Query 3847 AATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTG 3902 | || |||| ||||| | || || || |||||||| |||||| |||| |||| Sbjct 79 TCTTATAATGACTCATACCCATGGTAAGGGAGTACATTTCATGATGTCTGATGGTG 24 >seq6046 Length=821 Score = 87.8 bits (96), Expect = 1e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 3962 TGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTT 4021 ||||| ||| || | || |||||| | || || || || |||| ||| | || | Sbjct 821 TGTCAGTGTCTAGTAGCTTTGATGGTTGTAAGAGAGGGAGGACATTTTGTCACAAACATA 762 Query 4022 TTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAAT 4081 || || | ||||||||||||||||| || ||| ||| | |||||| | ||| | Sbjct 761 TTTGACCTTTTTACACCTTTTAGTGCAGGCTTAACATATCTAATGTATCTTTGCTTTGAA 702 Query 4082 CGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTG 4141 ||||||||||| |||||| |||| || ||||| || ||||| || ||| |||| | Sbjct 701 GAAATTTGTATTTTAAAACCAAATTCTTCTCGACCAGCAAATTCAGAGCGATTTTTGATA 642 Query 4142 TGT 4144 ||| Sbjct 641 TGT 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276532480465798