Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_005905.1
Length=86462
Score E
Sequences producing significant alignments: (Bits) Value
seq388 286 2e-72
seq5596 136 2e-27
seq6046 87.8 1e-12
>seq388
Length=1669248
Score = 286 bits (316), Expect = 2e-72
Identities = 383/527 (73%), Gaps = 12/527 (2%)
Strand=Plus/Plus
Query 3617 AATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATG 3676
||||| ||| | |||||||| || ||||| ||||||||||||||||||||||||||| |
Sbjct 685908 AATGAGTTGTTGTATTTTGCAGATGTATGTGCTGGTCCAGGTGGTTTCAGTGAATATGTT 685967
Query 3677 TTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaa----aa 3732
|||||||||| |||||| || ||||||| |||| | || || |||||| ||
Sbjct 685968 TTATGGAGAAGAAAATGGCATGCAAAAGGTTTTGGTCTTACTTT----GAAAAATGAGAA 686023
Query 3733 TGATTTTCAACTGAACAGATTTT-ACG-ATAACTTTTCGGAAACTTTACACCCGTATTAT 3790
||||||| || | | | |||||| | | | || || || |||| || || || ||||||
Sbjct 686024 TGATTTTAAATT-AGCTGATTTTTATGCAGGACCTTGCG-AAACATTTCATCCCTATTAT 686081
Query 3791 GGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATG 3850
|| || | ||||| || | || || | || || | | ||| | || |
Sbjct 686082 GGACCAAAAGATAATGGTGATGTTTATGATCCTTGTAACCAAGATGCTTTCAGAGATCTC 686141
Query 3851 ATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCG 3910
|| |||| | |||| | || ||||| |||||||| |||||| | || || || || ||
Sbjct 686142 ATAATGACACATACACATGGCAAAGGAGTACATTTCATGATGTCGGATGGAGGATTTTCA 686201
Query 3911 GTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGT 3970
|| || |||||||||||||| ||||| || | |||||| || ||||| | |||||||||
Sbjct 686202 GTAGAAGGTCAAGAAAATATACAAGAGATTCTCTCGAAACAGTTGTATCTCTGTCAATGT 686261
Query 3971 TTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATA 4030
|||||||| || ||||| |||||| | ||||||| ||||| || || || || |
Sbjct 686262 TTAATTGCCTTAATGATTATACGAGTAAAAGGTCATTTTGTTACAAAGTTATTTGACCTT 686321
Query 4031 TTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGT 4090
||||| || ||||| || |||||||| || || |||||| | | ||| | ||||||
Sbjct 686322 TTTACGCCCTTTAGCGCAGGTTTAGTTTACTTAATGTATCGTTGTTTCGAAGAAATTTGT 686381
Query 4091 ATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137
|||||||| || |||| || | || || ||||| ||| | |||||
Sbjct 686382 ATTTTCAAGCCGAATTCTTCTAGGCCAGCAAATTCAGAACGTTATTT 686428
Score = 226 bits (250), Expect = 2e-54
Identities = 499/742 (67%), Gaps = 11/742 (1%)
Strand=Plus/Plus
Query 3410 TTTTGTGATAAAAATATTGTACATAATATATTGCATTTCAAATCTATCTTCGACAATATC 3469
||||||||| | ||||| | ||||| || ||||| ||||| | || |||| ||
Sbjct 2256 TTTTGTGATGAGAATATGCTTAGAAATATTTTACATTTAAAATCAACATTGTACAAAATA 2315
Query 3470 GATaaaaaaaaaTTATGTGACGCCAGGGCAAGATCCAACCCATTCGAATTAGTGGGCAAA 3529
|| | | | ||||| | | || || | | || | || ||| | | ||||
Sbjct 2316 CATGATGACA---TATGTCATGTATGGACACGCTGTAATACTTTTGAAACAATCCGCAAT 2372
Query 3530 GCtttttttATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTC 3589
|| || ||| | || | |||||| ||||||||||| || ||| | ||| || ||
Sbjct 2373 GCATTCTTTTTAAATCGTTCTGCTGTTAAAATGGCAAATATGGATAAAGCATGTAACTTT 2432
Query 3590 GTATTTACACGAT-TGAATGATGGATCAA--ATGAATTGATATATTTTGCTGACGTATGC 3646
| ||||| | || | | | || || |||| ||| |||||||||| || |||||
Sbjct 2433 ATGTTTACCAAACCTGCAGGTTTGAAGAACAATGAGTTGCTATATTTTGCAGATGTATGT 2492
Query 3647 GCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGT 3706
||||| |||||||||||||||||||| | | ||||||||||||||| || |||||
Sbjct 2493 GCTGGCCCAGGTGGTTTCAGTGAATACGTTCTGTGGAGAAAGAAATGGCATGCAAAAGGA 2552
Query 3707 TATGGTATGACGTTACGCGaaaaaaaTGATTTTCAACTGAACAGATTTTACGATAACTTT 3766
| |||| | || ||| | | | |||| ||| || | || | |||| | | | |
Sbjct 2553 TTTGGTCTTACTTTAAAAAATATAGATGACTTTGAATTAAATAAATTTCAAGCTGGTCCT 2612
Query 3767 TCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAA 3826
| ||||| || || || |||||||| || |||||| |||| | || |
Sbjct 2613 TGCGAAACATTTCATCCATATTATGGACCAAAAGGTGATGGTGATATTTTTGATCCCAGT 2672
Query 3827 AATCAGAAAGGTTTTTGTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTT 3886
||||| |||| ||| | | | || |||| ||||| | || || || ||||||||
Sbjct 2673 AATCAAAAAGCTTTCAGAAATCTTATAATGACTCATACCCATGGTAAGGGAGTACATTTC 2732
Query 3887 ATGATGGCTGACGGTGGGTTCTCGGTT---GAGGGTCAAGAAAATATGCAAGAAATGTTA 3943
|||||| |||| |||| || || ||||||||| ||| | | ||||| || ||
Sbjct 2733 ATGATGTCTGATGGTGCATTTGAAATTGAAGAGGGTCAAAAAAGTTTACAAGAGAT-TTT 2791
Query 3944 TCGAAAA-AGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGG 4002
|| |||| | || ||| | ||||| ||| || | || |||||| | || || || ||
Sbjct 2792 TCTAAAACAAATATATCTCTGTCAGTGTCTAGTAGCTTTGATGGTTGTAAGAGAGGGAGG 2851
Query 4003 TCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTT 4062
|||| ||| | || | || || | ||||||||||||||||| || ||| ||| |
Sbjct 2852 ACATTTTGTCACAAACATATTTGACCTTTTTACACCTTTTAGTGCAGGCTTAACATATCT 2911
Query 4063 GATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAA 4122
|||||| | ||| | ||||||||||| |||||| |||| || ||||| || ||
Sbjct 2912 AATGTATCTTTGCTTTGAAGAAATTTGTATTTTAAAACCAAATTCTTCTCGACCAGCAAA 2971
Query 4123 TTCTGAAAGATATTTGGTGTGT 4144
||| || ||| |||| | |||
Sbjct 2972 TTCAGAGCGATTTTTGATATGT 2993
>seq5596
Length=417
Score = 136 bits (150), Expect = 2e-27
Identities = 245/356 (69%), Gaps = 3/356 (1%)
Strand=Plus/Minus
Query 3550 TGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTTACACGAT-TGAATG 3608
|||||| ||||||||||| || ||| | ||| || || | ||||| | || | |
Sbjct 379 TGCTGTTAAAATGGCAAATATGGATAAAGCATGTAACTTTATGTTTACCAAACCTGCAGG 320
Query 3609 ATGGATCAA--ATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAG 3666
| || || |||| ||| |||||||||| || ||||| ||||| ||||||||||||||
Sbjct 319 TTTGAAGAACAATGAGTTGCTATATTTTGCAGATGTATGTGCTGGCCCAGGTGGTTTCAG 260
Query 3667 TGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGa 3726
|||||| | | ||||||||||||||| || ||||| | |||| | || ||| |
Sbjct 259 TGAATACGTTCTGTGGAGAAAGAAATGGCATGCAAAAGGATTTGGTCTTACTTTAAAAAA 200
Query 3727 aaaaaaTGATTTTCAACTGAACAGATTTTACGATAACTTTTCGGAAACTTTACACCCGTA 3786
| | |||| ||| || | || | |||| | | | || ||||| || || || ||
Sbjct 199 TATAGATGACTTTGAATTAAATAAATTTCAAGCTGGTCCTTGCGAAACATTTCATCCATA 140
Query 3787 TTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGA 3846
|||||| || |||||| |||| | || | ||||| |||| ||| | |
Sbjct 139 TTATGGACCAAAAGGTGATGGTGATATTTTTGATCCCAGTAATCAAAAAGCTTTCAGAAA 80
Query 3847 AATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTG 3902
| || |||| ||||| | || || || |||||||| |||||| |||| ||||
Sbjct 79 TCTTATAATGACTCATACCCATGGTAAGGGAGTACATTTCATGATGTCTGATGGTG 24
>seq6046
Length=821
Score = 87.8 bits (96), Expect = 1e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 3962 TGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTT 4021
||||| ||| || | || |||||| | || || || || |||| ||| | || |
Sbjct 821 TGTCAGTGTCTAGTAGCTTTGATGGTTGTAAGAGAGGGAGGACATTTTGTCACAAACATA 762
Query 4022 TTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAAT 4081
|| || | ||||||||||||||||| || ||| ||| | |||||| | ||| |
Sbjct 761 TTTGACCTTTTTACACCTTTTAGTGCAGGCTTAACATATCTAATGTATCTTTGCTTTGAA 702
Query 4082 CGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTG 4141
||||||||||| |||||| |||| || ||||| || ||||| || ||| |||| |
Sbjct 701 GAAATTTGTATTTTAAAACCAAATTCTTCTCGACCAGCAAATTCAGAGCGATTTTTGATA 642
Query 4142 TGT 4144
|||
Sbjct 641 TGT 639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 276532480465798
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |