Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq453 118 6e-22
seq133 118 6e-22
seq126 118 6e-22
seq604 111 8e-20
seq132 111 8e-20
>seq453
Length=4956680
Score = 118 bits (130), Expect = 6e-22
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 4129129 AAAAAAAAAAACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 4129188
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530
||||| |||||||||||||||||||||
Sbjct 4129189 GCTCTAACCAACTGAGCTAATGGGCCG 4129215
>seq133
Length=1601264
Score = 118 bits (130), Expect = 6e-22
Identities = 84/96 (88%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 11435 AGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
|||| ||||||||| | | |||||||||| |||||||||| ||||||||||||||
Sbjct 278633 AGAAAAAATAAAAAAAATATTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 278692
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||||||||||||||||||||
Sbjct 278693 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 278728
Score = 105 bits (116), Expect = 3e-18
Identities = 63/67 (94%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 311321 GGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGG 311380
Query 11528 CCGTCGA 11534
|||| ||
Sbjct 311381 CCGTTGA 311387
Score = 89.7 bits (98), Expect = 3e-13
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| |||| |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 311227 AAAAAAAGAAAT-GGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 311285
Query 11504 GCTCTRACCAACTGAGCTAA 11523
||||| |||||| | ||||
Sbjct 311286 GCTCTAACCAACCGCTCTAA 311305
>seq126
Length=3386563
Score = 118 bits (130), Expect = 6e-22
Identities = 80/90 (89%), Gaps = 3/90 (3%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||||| | |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 2557365 AATAAAAAAAGA---TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 2557309
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||| |||||||||||||||||||||
Sbjct 2557308 GACGCTCTAACCAACTGAGCTAATGGGCCG 2557279
>seq604
Length=1435509
Score = 111 bits (122), Expect = 8e-20
Identities = 72/80 (90%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509
|| || ||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1258575 TCTAACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTA 1258516
Query 11510 ACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||||
Sbjct 1258515 ACCAACTGAGCTAATGGGCC 1258496
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1258637 AAAAAAAAAAGTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 1258578
Query 11504 GCTCTRAC 11511
||||| ||
Sbjct 1258577 GCTCTAAC 1258570
>seq132
Length=2635636
Score = 111 bits (122), Expect = 8e-20
Identities = 77/88 (88%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| | ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 942821 AAAAATAATTCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 942880
Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||| |||||||||||||||||||| ||
Sbjct 942881 CTCTAACCAACTGAGCTAATGGGCCATC 942908
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261471230734216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |