Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq453 118 6e-22 seq133 118 6e-22 seq126 118 6e-22 seq604 111 8e-20 seq132 111 8e-20 >seq453 Length=4956680 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4129129 AAAAAAAAAAACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 4129188 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 4129189 GCTCTAACCAACTGAGCTAATGGGCCG 4129215 >seq133 Length=1601264 Score = 118 bits (130), Expect = 6e-22 Identities = 84/96 (88%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||| ||||||||| | | |||||||||| |||||||||| |||||||||||||| Sbjct 278633 AGAAAAAATAAAAAAAATATTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 278692 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 278693 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 278728 Score = 105 bits (116), Expect = 3e-18 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 311321 GGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGG 311380 Query 11528 CCGTCGA 11534 |||| || Sbjct 311381 CCGTTGA 311387 Score = 89.7 bits (98), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| |||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 311227 AAAAAAAGAAAT-GGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 311285 Query 11504 GCTCTRACCAACTGAGCTAA 11523 ||||| |||||| | |||| Sbjct 311286 GCTCTAACCAACCGCTCTAA 311305 >seq126 Length=3386563 Score = 118 bits (130), Expect = 6e-22 Identities = 80/90 (89%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 2557365 AATAAAAAAAGA---TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 2557309 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 2557308 GACGCTCTAACCAACTGAGCTAATGGGCCG 2557279 >seq604 Length=1435509 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 || || ||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 1258575 TCTAACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTA 1258516 Query 11510 ACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| Sbjct 1258515 ACCAACTGAGCTAATGGGCC 1258496 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1258637 AAAAAAAAAAGTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 1258578 Query 11504 GCTCTRAC 11511 ||||| || Sbjct 1258577 GCTCTAAC 1258570 >seq132 Length=2635636 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 942821 AAAAATAATTCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 942880 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| |||||||||||||||||||| || Sbjct 942881 CTCTAACCAACTGAGCTAATGGGCCATC 942908 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261471230734216