Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq132 197 2e-46 seq665 159 5e-35 seq99 132 8e-27 >seq132 Length=2635636 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | ||||| |||||||||||||| ||||| || || || ||| Sbjct 875821 GCTAAGCGTCACAGGAAGGTACTTCGTGATAACATCCAAGGTATCACGAAACCCGCCATC 875880 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||||||||||||||| | ||||| ||| |||| ||||| | Sbjct 875881 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGAATTTCTGGCTTGATCTACGAAGAAACG 875940 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||| | | | |||||||| |||||| | || |||||| Sbjct 875941 CGAGGTGTCTTGAAAGTATTCTTGGAAAACGTTATCCGAGATGCTGTGACTTACACCGAG 876000 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||| | ||||| || || |||||||| ||||||| || ||||||| |||||| Sbjct 876001 CACGCTAAAAGGAAGACGGTTACGGCCATGGATGTCGTCTACGCTCTGAAACGCCAAGGC 876060 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| || ||||| Sbjct 876061 AGAACTCTCTACGGTTTCGGCGGTTAA 876087 Score = 174 bits (192), Expect = 2e-39 Identities = 201/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||| | | ||||| |||||||||||||| ||||| || || || || Sbjct 878441 CGCAAAGCGTCATAGGAAGGTACTTCGTGATAACATCCAAGGTATCACGAAACCTGCCAT 878500 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || || ||||| || ||||| ||| | ||||| ||| | || ||||||| Sbjct 878501 TCGTCGTCTTGCACGACGTGGCGGTGTCAAACGTATTTCTGGTTTGATTTACGAAGAGAC 878560 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | || | ||||| ||| ||||| | ||| ||| || |||||| || Sbjct 878561 ACGTGGCGTTCTCAAAGTTTTCCTTGAGAATGTTATTCGTGACGCTGTCACCTATACTGA 878620 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || ||| | ||||| || || | |||||| |||||||||| |||||||| ||||| Sbjct 878621 GCATGCGAAAAGAAAGACCGTTACGGCTATGGATGTCGTCTATGCCTTGAAACGGCAAGG 878680 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | | | || |||||||| ||||| || Sbjct 878681 TAGAACCCTGTACGGTTTTGGTGGTTAAGCT 878711 >seq665 Length=2298905 Score = 159 bits (176), Expect = 5e-35 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||| ||||| || ||||| || |||||||| ||||| |||||||||||||| Sbjct 2001587 CTTCGTGATAATATCCAGGGTATCACGAAACCAGCTATTCGTCGCTTGGCTCGTCGTGGT 2001646 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||| ||| | |||||||| | || || || | ||||| || |||| | ||| Sbjct 2001647 GGTGTCAAACGTATTTCTGGATTAATTTACGAGGAAACTCGTGGCGTGCTGAAAGTTTTC 2001706 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| || | ||| || | || || ||||| |||||||| |||||||| Sbjct 2001707 CTGGAAAACGTAATTCGTGACGCAGTTACGTACACGGAGCATGCTAAACGAAAGACTGTA 2001766 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| |||||||||| ||||| | ||||| || | | || ||||||||| Sbjct 2001767 ACGGCTATGGACGTCGTCTATGCGTTGAAGAGGCAAGGACGCACTCTGTACGGTTTTGGA 2001826 Query 16694 AGTTAA 16699 ||||| Sbjct 2001827 GGTTAA 2001832 >seq99 Length=4621182 Score = 132 bits (146), Expect = 8e-27 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||| |||||||| || || ||||| |||||||||||| |||| || ||||| Sbjct 336963 CTTCGTGATAATATCCAAGGTATTACGAAGCCTGCTATCCGTCGTTTGGCACGACGTGGA 336904 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || | | || || ||| | |||||||| | ||| | ||| | ||| | ||| Sbjct 336903 GGAGTTAAAAGAATTTCCGGCTTGATTTATGAAGAAACTCGAGGAGTTCTAAAGGTTTTC 336844 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| || | ||| ||| | || || || ||||| || | ||||| || Sbjct 336843 CTTGAAAACGTAATTCGTGACGCTGTTACTTACACTGAACACGCCAAGAGGAAGACAGTA 336784 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | || ||||| ||||| |||||||| | | ||||||| ||||| Sbjct 336783 ACTGCTATGGACGTGGTTTATGCTTTGAAGCGTCAAGGAAGAACTCTTTATGGATTTGGC 336724 Query 16694 AGTTAA 16699 ||||| Sbjct 336723 GGTTAA 336718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069470952338