Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq132 197 2e-46
seq665 159 5e-35
seq99 132 8e-27
>seq132
Length=2635636
Score = 197 bits (218), Expect = 2e-46
Identities = 204/267 (76%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||||||||| | | ||||| |||||||||||||| ||||| || || || |||
Sbjct 875821 GCTAAGCGTCACAGGAAGGTACTTCGTGATAACATCCAAGGTATCACGAAACCCGCCATC 875880
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||||||||||||||||||||||||||| | ||||| ||| |||| ||||| |
Sbjct 875881 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGAATTTCTGGCTTGATCTACGAAGAAACG 875940
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| ||||| | ||| | | | |||||||| |||||| | || ||||||
Sbjct 875941 CGAGGTGTCTTGAAAGTATTCTTGGAAAACGTTATCCGAGATGCTGTGACTTACACCGAG 876000
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||||||| | ||||| || || |||||||| ||||||| || ||||||| ||||||
Sbjct 876001 CACGCTAAAAGGAAGACGGTTACGGCCATGGATGTCGTCTACGCTCTGAAACGCCAAGGC 876060
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | || ||||| || |||||
Sbjct 876061 AGAACTCTCTACGGTTTCGGCGGTTAA 876087
Score = 174 bits (192), Expect = 2e-39
Identities = 201/271 (74%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||| | | ||||| |||||||||||||| ||||| || || || ||
Sbjct 878441 CGCAAAGCGTCATAGGAAGGTACTTCGTGATAACATCCAAGGTATCACGAAACCTGCCAT 878500
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||| || || ||||| || ||||| ||| | ||||| ||| | || |||||||
Sbjct 878501 TCGTCGTCTTGCACGACGTGGCGGTGTCAAACGTATTTCTGGTTTGATTTACGAAGAGAC 878560
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| | || | ||||| ||| ||||| | ||| ||| || |||||| ||
Sbjct 878561 ACGTGGCGTTCTCAAAGTTTTCCTTGAGAATGTTATTCGTGACGCTGTCACCTATACTGA 878620
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || ||| | ||||| || || | |||||| |||||||||| |||||||| |||||
Sbjct 878621 GCATGCGAAAAGAAAGACCGTTACGGCTATGGATGTCGTCTATGCCTTGAAACGGCAAGG 878680
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
| | | || |||||||| ||||| ||
Sbjct 878681 TAGAACCCTGTACGGTTTTGGTGGTTAAGCT 878711
>seq665
Length=2298905
Score = 159 bits (176), Expect = 5e-35
Identities = 183/246 (74%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||||| ||||| ||||| || ||||| || |||||||| ||||| ||||||||||||||
Sbjct 2001587 CTTCGTGATAATATCCAGGGTATCACGAAACCAGCTATTCGTCGCTTGGCTCGTCGTGGT 2001646
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||| ||| | |||||||| | || || || | ||||| || |||| | |||
Sbjct 2001647 GGTGTCAAACGTATTTCTGGATTAATTTACGAGGAAACTCGTGGCGTGCTGAAAGTTTTC 2001706
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| | | ||| || | ||| || | || || ||||| |||||||| ||||||||
Sbjct 2001707 CTGGAAAACGTAATTCGTGACGCAGTTACGTACACGGAGCATGCTAAACGAAAGACTGTA 2001766
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| | ||||| |||||||||| ||||| | ||||| || | | || |||||||||
Sbjct 2001767 ACGGCTATGGACGTCGTCTATGCGTTGAAGAGGCAAGGACGCACTCTGTACGGTTTTGGA 2001826
Query 16694 AGTTAA 16699
|||||
Sbjct 2001827 GGTTAA 2001832
>seq99
Length=4621182
Score = 132 bits (146), Expect = 8e-27
Identities = 177/246 (72%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||||| ||||| |||||||| || || ||||| |||||||||||| |||| || |||||
Sbjct 336963 CTTCGTGATAATATCCAAGGTATTACGAAGCCTGCTATCCGTCGTTTGGCACGACGTGGA 336904
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| || | | || || ||| | |||||||| | ||| | ||| | ||| | |||
Sbjct 336903 GGAGTTAAAAGAATTTCCGGCTTGATTTATGAAGAAACTCGAGGAGTTCTAAAGGTTTTC 336844
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| | | ||| || | ||| ||| | || || || ||||| || | ||||| ||
Sbjct 336843 CTTGAAAACGTAATTCGTGACGCTGTTACTTACACTGAACACGCCAAGAGGAAGACAGTA 336784
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| | ||||| | || ||||| ||||| |||||||| | | ||||||| |||||
Sbjct 336783 ACTGCTATGGACGTGGTTTATGCTTTGAAGCGTCAAGGAAGAACTCTTTATGGATTTGGC 336724
Query 16694 AGTTAA 16699
|||||
Sbjct 336723 GGTTAA 336718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79069470952338
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |