Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq305 89.7 5e-13
>seq305
Length=1407860
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829
|||||||| ||||| | |||||| || |||| || || || || ||||| | |||||||
Sbjct 686682 TACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCT 686741
Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889
| || || || | |||||||| | | | |||||||| || ||||||||| |
Sbjct 686742 GTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAG 686801
Query 21890 GCGGCAAAAAATGCCAATATAT 21911
|| ||||||||||| |||| ||
Sbjct 686802 GCTGCAAAAAATGCTAATACAT 686823
Score = 86.0 bits (94), Expect = 7e-12
Identities = 116/159 (73%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 21116 AAAATATTTAT--TTAAAAATCAGCATCTAATGAGAAAACATTATC--TTCtttttttGA 21171
|||||| ||| |||||| || |||| | || ||| | | || |||| | ||
Sbjct 685790 AAAATACTTAACATTAAAAGTCGGCATTAACTGTAAAATTACTTTCAATTCTATCTTG-- 685847
Query 21172 CATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC 21231
||| | |||| ||||| || || | |||| |||| || ||||| ||||| || |||||
Sbjct 685848 CATGACTCCCCACTTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTC 685907
Query 21232 CAATGATATAGATTCCATAAAATCAAATGGATTTTCAGA 21270
||| || ||| ||||||||||||||||||||||| ||
Sbjct 685908 CAAAGAAATATGCTCCATAAAATCAAATGGATTTTCGGA 685946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531859138869840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |