Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq305 89.7 5e-13 >seq305 Length=1407860 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 |||||||| ||||| | |||||| || |||| || || || || ||||| | ||||||| Sbjct 686682 TACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCT 686741 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | || || || | |||||||| | | | |||||||| || ||||||||| | Sbjct 686742 GTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAG 686801 Query 21890 GCGGCAAAAAATGCCAATATAT 21911 || ||||||||||| |||| || Sbjct 686802 GCTGCAAAAAATGCTAATACAT 686823 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 21116 AAAATATTTAT--TTAAAAATCAGCATCTAATGAGAAAACATTATC--TTCtttttttGA 21171 |||||| ||| |||||| || |||| | || ||| | | || |||| | || Sbjct 685790 AAAATACTTAACATTAAAAGTCGGCATTAACTGTAAAATTACTTTCAATTCTATCTTG-- 685847 Query 21172 CATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC 21231 ||| | |||| ||||| || || | |||| |||| || ||||| ||||| || ||||| Sbjct 685848 CATGACTCCCCACTTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTC 685907 Query 21232 CAATGATATAGATTCCATAAAATCAAATGGATTTTCAGA 21270 ||| || ||| ||||||||||||||||||||||| || Sbjct 685908 CAAAGAAATATGCTCCATAAAATCAAATGGATTTTCGGA 685946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531859138869840