Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq105 158 2e-33 seq305 116 5e-21 >seq105 Length=615523 Score = 158 bits (174), Expect = 2e-33 Identities = 198/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 62244 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62303 |||||||| ||| | ||| ||||| ||| || || | || | ||| | | ||| Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462 Query 62304 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62363 || |||||| ||| | | ||| ||||| |||| ||||||||||| ||||| |||| Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402 Query 62364 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62423 || || ||||| ||||| || || ||||| | || |||||||||||||||||||| || Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342 Query 62424 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 62483 || ||||| || ||||| || || | ||| ||| |||||| | |||| | || ||| Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282 Query 62484 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515 || |||||||| | | |||| | ||| | ||| Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATC 157250 Score = 116 bits (128), Expect = 5e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185 ||||| || |||||| || || |||||||||| | ||||||||| |||||| ||| Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332 Query 63186 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63245 |||||||| | ||| | || | ||| |||||||||||||| |||||||||||||| Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272 Query 63246 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 | ||| ||||| ||||| | ||||| ||| || || ||| Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230 Score = 113 bits (124), Expect = 6e-20 Identities = 217/314 (69%), Gaps = 12/314 (4%) Strand=Plus/Minus Query 63285 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63344 || ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | ||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 63345 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63404 | || | ||||||||||||| |||||||||||||| | |||||||| |||||||| Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 63405 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG--C 63462 || || || | ||| || | | || || |||| |||| ||||| || ||| | Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992 Query 63463 TTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518 | || || || || || || ||| ||| ||| || || || || || ||| Sbjct 155991 TACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTA 155936 Query 63519 ATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTA 63578 || ||||| || | || || || ||||| || || || |||||||| || |||| | Sbjct 155935 ATCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAA 155876 Query 63579 AGTAGAAAACAGCT 63592 || || ||||| || Sbjct 155875 AGAAGGAAACAACT 155862 >seq305 Length=1407860 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| ||||| | ||||| || || | || || || |||||||| | ||||| Sbjct 686682 TACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCT 686741 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 || ||||||||||| || ||||||||| | | ||||||||| || ||||| ||| | Sbjct 686742 GTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAG 686801 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 33748 ||||||||||| || |||||||| ||| |||| Sbjct 686802 GCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 || ||| || ||||| ||||| |||||| ||| | || ||||||||| ||||| | Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 || ||| || | || | || | ||||||||||||||| || |||||| | ||||| Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 || |||| || | ||| || | | |||||||||||| |||||||| || Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACATGCAAA 686230 Query 33312 ATCGCAGTGCAGACCCT 33328 ||| || || | |||| Sbjct 686231 ATCACAATGTAATCCCT 686247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622898407660560