Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq105 158 2e-33
seq305 116 5e-21
>seq105
Length=615523
Score = 158 bits (174), Expect = 2e-33
Identities = 198/272 (73%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 62244 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62303
|||||||| ||| | ||| ||||| ||| || || | || | ||| | | |||
Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462
Query 62304 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62363
|| |||||| ||| | | ||| ||||| |||| ||||||||||| ||||| ||||
Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402
Query 62364 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62423
|| || ||||| ||||| || || ||||| | || |||||||||||||||||||| ||
Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342
Query 62424 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 62483
|| ||||| || ||||| || || | ||| ||| |||||| | |||| | || |||
Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282
Query 62484 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515
|| |||||||| | | |||| | ||| | |||
Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATC 157250
Score = 116 bits (128), Expect = 5e-21
Identities = 123/162 (76%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185
||||| || |||||| || || |||||||||| | ||||||||| |||||| |||
Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332
Query 63186 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63245
|||||||| | ||| | || | ||| |||||||||||||| ||||||||||||||
Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272
Query 63246 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
| ||| ||||| ||||| | ||||| ||| || || |||
Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230
Score = 113 bits (124), Expect = 6e-20
Identities = 217/314 (69%), Gaps = 12/314 (4%)
Strand=Plus/Minus
Query 63285 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63344
|| ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | |||
Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110
Query 63345 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63404
| || | ||||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050
Query 63405 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG--C 63462
|| || || | ||| || | | || || |||| |||| ||||| || ||| |
Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992
Query 63463 TTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518
| || || || || || || ||| ||| ||| || || || || || |||
Sbjct 155991 TACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTA 155936
Query 63519 ATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTA 63578
|| ||||| || | || || || ||||| || || || |||||||| || |||| |
Sbjct 155935 ATCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAA 155876
Query 63579 AGTAGAAAACAGCT 63592
|| || ||||| ||
Sbjct 155875 AGAAGGAAACAACT 155862
>seq305
Length=1407860
Score = 116 bits (128), Expect = 5e-21
Identities = 118/154 (77%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654
|||||||| ||||| | ||||| || || | || || || |||||||| | |||||
Sbjct 686682 TACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCT 686741
Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714
|| ||||||||||| || ||||||||| | | ||||||||| || ||||| ||| |
Sbjct 686742 GTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAG 686801
Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 33748
||||||||||| || |||||||| ||| ||||
Sbjct 686802 GCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835
Score = 86.0 bits (94), Expect = 8e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191
|| ||| || ||||| ||||| |||||| ||| | || ||||||||| ||||| |
Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110
Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251
|| ||| || | || | || | ||||||||||||||| || |||||| | |||||
Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170
Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311
|| |||| || | ||| || | | |||||||||||| |||||||| ||
Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACATGCAAA 686230
Query 33312 ATCGCAGTGCAGACCCT 33328
||| || || | ||||
Sbjct 686231 ATCACAATGTAATCCCT 686247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622898407660560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |