Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq467 107 2e-18 seq307 104 2e-17 >seq467 Length=2555529 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||| || ||||||||||| || Sbjct 1364387 CCACCACGAAGACGGAGTACAAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCAGAT 1364446 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || |||| |||||| || ||| |||| || | |||||||| || ||| Sbjct 1364447 AGTGTGCGCCCATCTTCTAACTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGGGGG 1364506 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || |||||| ||| | | ||| | ||| || | | ||| | Sbjct 1364507 ATGCCTTCTTTATCCTGGATTTTAGCCTTAACGTTCTCAATAGTGTCTGATGCCTCAACT 1364566 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || |||||||| || || |||||||| Sbjct 1364567 TCCAAAGTAATGGTCTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 1364613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || || ||||| || || ||||| Sbjct 1365660 CCACCACGGAGACGGAGAACGAGATGAAGGGTTGATTCTTTTTGGATATTATAATCAGAA 1365719 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||||| || ||||||| | ||||||||| |||||| Sbjct 1365720 AGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAAGATTAATCTCTGCTGGTCTGGAGGG 1365779 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| || | | || | ||||||| | ||| | Sbjct 1365780 ATACCTTCCTTGTCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCGGACGCCTCAACT 1365839 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || || ||||||||||| |||||||| Sbjct 1365840 TCCAATGTTATTGTTTTTCCAGTAAGTGTTTTTACGAAGATCTGCAT 1365886 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || || |||||||| || ||||| || Sbjct 1366344 CCACCACGGAGACGGAGTACAAGGTGAAGTGTAGATTCCTTTTGTATATTGTAGTCAGAA 1366403 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || |||| || || || ||| |||| || | |||||| || || ||| Sbjct 1366404 AGTGTGCGTCCATCTTCTAATTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGG 1366463 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || || ||||| || |||||| ||||| | | | ||| | || || | | ||| | Sbjct 1366464 ATGCCCTCTTTATCCTGGATTTT-TGCTTTAACATTCTCGATGGTGTCTGATGCCTCAAC 1366522 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | |||||| || || | || |||||||||||||||||| Sbjct 1366523 CTCGAGGGTTATGGTTTTTCCCGTCAATGTCTTTACGAAAATCTGCATG 1366571 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || || |||||||| ||||||||| Sbjct 1364615 CCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGAT 1364674 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || |||| || || || || |||| || | || || || ||||| Sbjct 1364675 AACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGA 1364734 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||| ||| | | ||| | || || | | ||| | Sbjct 1364735 ATACCTTCTTTGTCCTGAATTTTAGCCTTTACATTCTCAATGGTGTCAGATGCCTCAACT 1364794 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || || || ||||| ||||| |||||||| Sbjct 1364795 TCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACGAATATCTGCAT 1364841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| || || | ||| | |||||||| || |||||||| || || | | Sbjct 1365204 CCACCACGGAGACGAAGTACAAGATGGAGTGTCGACTCTTTCTGAATGTTATAGTCAGAT 1365263 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 ||| |||| || || | || ||||| || | || || | ||| ||||| ||||| Sbjct 1365264 AATG-TGCGTCCATCTTCCAATTGTTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGAGG 1365322 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||||| ||| | | ||| | || || | | ||| | Sbjct 1365323 AATACCTTCTTTGTCCTGAATTTTAGCCTTTACATTCTCAATGGTGTCAGATGCCTCAAC 1365382 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || || || ||||| ||||| |||||||| Sbjct 1365383 TTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACGAATATCTGCAT 1365430 >seq307 Length=2169461 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || ||||||||||| ||||| || || | || || |||||||| ||| Sbjct 1509831 GTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGCTTCCCT 1509772 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || ||||||| || |||||||| ||||||||||| |||||||| ||| ||| |||| Sbjct 1509771 GCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTCGCCTTG 1509712 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | ||||| | | |||| || | ||| | ||| || || || || || Sbjct 1509711 ACATTCTCTATCGTATCTGAAGCTTCGACTTCCAGGGTGATGGTCTTCCCTGTAAGTGTC 1509652 Query 131218 TTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 1509651 TTGACAAAGATCTGCAT 1509635 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || | ||| | ||| || || ||||||||||| ||||| || || | | || Sbjct 1515655 AGAACCAGATGAAGGGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTCCCATCT 1515596 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || |||||||| ||||| ||||||| || |||||||| ||||| |||||||||||||| Sbjct 1515595 TCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCT 1515536 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || |||| | ||| | || || | || || | || | ||| | ||| Sbjct 1515535 TGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTT 1515476 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || ||||| || ||||| || ||||| Sbjct 1515475 TTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1515444 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || ||||||||||| ||||| || || | || || |||||||| ||| Sbjct 1510287 GTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGCTTCCCT 1510228 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || ||||||| || |||||||| ||||||||||| |||||||| ||| ||| ||| Sbjct 1510227 GCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTCGCCTTT 1510168 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | | |||| || | ||| | |||||| || || ||||| Sbjct 1510167 ACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTC 1510108 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| || ||||| Sbjct 1510107 TTGACGAAGATTTGCAT 1510091 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || ||||||||||| ||||| || || | || || |||||||| ||| Sbjct 1510515 GTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGCTTCCCT 1510456 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || ||||||| || |||||||| ||||||||||| |||||||| ||| ||| ||| Sbjct 1510455 GCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTCGCCTTT 1510396 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | | |||| || | ||| | |||||| || || ||||| Sbjct 1510395 ACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTC 1510336 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| || ||||| Sbjct 1510335 TTGACGAAGATTTGCAT 1510319 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || ||||||||||| ||||| || || | || || |||||||| ||| Sbjct 1514949 GTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGCTTCCCT 1514890 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || ||||||| || |||||||| ||||||||||| |||||||| ||| ||| ||| Sbjct 1514889 GCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTCGCCTTT 1514830 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | | |||| || | ||| | |||||| || || ||||| Sbjct 1514829 ACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTC 1514770 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| || ||||| Sbjct 1514769 TTGACGAAGATTTGCAT 1514753 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || | ||| | || || || ||||||||||||||||| | || | | || Sbjct 1515884 CAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAGAGTGTCCTCCCATC 1515825 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || |||||||| ||||| ||||||| || ||||| || ||||| ||||| |||||||| Sbjct 1515824 TTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGGTATTCCCTCTTTGTC 1515765 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || |||| | ||| | || || | | |||| || | ||| | ||| Sbjct 1515764 CTGGATCTTAGCTTTGACATTCTCTATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGT 1515705 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || ||||| || ||||| || ||||| Sbjct 1515704 TTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1515672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || ||||||||||| ||||| || || | || || |||||||| ||| Sbjct 1510743 GTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGCTTCCCT 1510684 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || ||||||| || |||||||| ||||| |||||||||||||| ||| || ||| Sbjct 1510683 GCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTAGCTTTG 1510624 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | || || | || || | || | ||| | ||||| || || ||||| Sbjct 1510623 ACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTTCCCTGTGAGAGTC 1510564 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| || ||||| Sbjct 1510563 TTCACGAAGATTTGCAT 1510547 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || ||||||||||| ||||| || || | || || |||||||| ||| Sbjct 1510059 GTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCGAGCTGCTTCCCT 1510000 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || ||||||| || |||||||| ||||||||||| |||||||| ||| ||| ||| Sbjct 1509999 GCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTCGCCTTT 1509940 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | | |||| || | || | |||||| || || || || Sbjct 1509939 ACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGAGTGATGGTTTTCCCTGTGAGTGTC 1509880 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| || ||||| Sbjct 1509879 TTCACGAAGATTTGCAT 1509863 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| ||||| ||||||| || |||||||| ||||||||||| |||||| Sbjct 1515135 TCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTG 1515076 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | || | || || | | |||| || | ||| | | Sbjct 1515075 TCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATG 1515016 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || ||||| || ||||| || ||||| Sbjct 1515015 GTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471975829597440