Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq105 161 1e-34
seq305 118 1e-21
>seq105
Length=615523
Score = 161 bits (178), Expect = 1e-34
Identities = 199/272 (73%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 62099 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62158
|||||||| ||| | ||| ||||| ||| || || | || | ||| | | |||
Sbjct 157521 TGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCTT 157462
Query 62159 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62218
|| |||||| ||| | | ||| ||||| |||| ||||||||||| ||||| ||||
Sbjct 157461 TCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCGT 157402
Query 62219 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 62278
|| || ||||| ||||| || || ||||| | ||| |||||||||||||||||||| ||
Sbjct 157401 CGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGCG 157342
Query 62279 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 62338
|| ||||| || ||||| || || | ||| ||| |||||| | |||| | || |||
Sbjct 157341 GTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAATT 157282
Query 62339 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62370
|| |||||||| | | |||| | ||| | |||
Sbjct 157281 TTTTCTTTTAGCGCTGCCCAGTCCCATAAATC 157250
Score = 113 bits (124), Expect = 6e-20
Identities = 122/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 62981 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGA 63040
||||| || |||||| || || |||||||||| | | ||||||| |||||| |||
Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332
Query 63041 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63100
|||||||| | ||| | || | ||| |||||||||||||| ||||||||||||||
Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272
Query 63101 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142
| ||| ||||| ||||| | ||||| ||| || || |||
Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230
Score = 109 bits (120), Expect = 7e-19
Identities = 216/314 (69%), Gaps = 12/314 (4%)
Strand=Plus/Minus
Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199
|| ||||| ||||| ||||| | || | | |||||| | |||||| ||||| | |||
Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110
Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259
| || | ||||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050
Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG--C 63317
|| || || | ||| || | | ||||| ||| |||| || || || ||| |
Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACC--AGCTATTGGTG 155992
Query 63318 TTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373
| || || || || || || ||| ||| ||| || || || || || |||
Sbjct 155991 TACCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTA 155936
Query 63374 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 63433
|| ||||| || | || || |||||||| || || || || ||||| || |||| |
Sbjct 155935 ATCAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAA 155876
Query 63434 AGTAGAAAACAGCT 63447
|| || ||||| ||
Sbjct 155875 AGAAGGAAACAACT 155862
>seq305
Length=1407860
Score = 118 bits (130), Expect = 1e-21
Identities = 131/175 (75%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990
|| |||||||| || | |||||||| ||||| | ||||| || || | ||| ||
Sbjct 686661 TACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAG 686720
Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050
|| ||||| || | ||||| || ||||||||||| || ||||||||| | | ||||
Sbjct 686721 CCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTT 686780
Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 33105
||||| || ||||| ||| |||||||||||| || |||||||| ||| ||||
Sbjct 686781 TCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATGAGATATGAAAT 686835
Score = 95.1 bits (104), Expect = 2e-14
Identities = 93/119 (78%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 33137 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33196
||| ||| ||| ||| | ||| ||||| ||||| ||||| || || || || || |||||
Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005
Query 33197 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255
|||||| | ||| || ||| | ||||||| ||||| | |||||||||| ||||||||
Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTTT 687064
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548
|| ||| |||||||||||||| |||||| ||| | || ||||||||| ||||| |
Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110
Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608
|| ||| || | || | || | ||||||||||||||| || || ||| | |||||
Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170
Query 32609 AGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCG 32666
|| | ||| || | ||| | || ||| |||||||||||| ||||||||
Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAAT--ATGTTTAAACATTAAACATGCA 686228
Query 32667 AAATCGCAGTGTAGACCCT 32685
||||| || |||| ||||
Sbjct 686229 AAATCACAATGTAATCCCT 686247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633582370773600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |