Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq305 156 5e-33 seq303 123 3e-23 seq54 113 5e-20 seq467 100 3e-16 >seq305 Length=1407860 Score = 156 bits (172), Expect = 5e-33 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| ||||| | || |||||||| ||||| ||||| ||||| || | |||| Sbjct 686658 ATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGG 686717 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | || || || ||||| ||||| ||| ||||| || || ||| Sbjct 686718 AAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGA 686777 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || ||||| || ||||||||||| || |||| ||| ||| ||||| Sbjct 686778 TTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATGAGATATGAAATGC 686837 Query 93542 TTCTCA 93547 |||||| Sbjct 686838 TTCTCA 686843 Score = 116 bits (128), Expect = 4e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 ||||||||||| || | ||||| | ||||||| ||||| | ||| || || | |||| Sbjct 686345 TCATTGCTGAACGTAAGTCCTGGCATAAGTCCTCTCTTCTTTAACCAGAAAATGGCAGCA 686404 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || |||||| || || |||||||| || || |||||||| || | |||||| | ||| Sbjct 686405 AAGCTACCACTGAAGAAAATACCTTCTACTGCGGCAAATGCGACTACACGTTCAGGGAAA 686464 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 | |||| | | | | ||||| || || ||||||| |||||||| || ||| ||| Sbjct 686465 GTAGCGGTTTCATGGTTTATCCAATTCAATGCCCAATTAGCTTTTTTTGCAACACAGGGT 686524 Query 93314 AGTGTTTCGATAGCGTTAAATA 93335 | |||| || || ||||||| Sbjct 686525 AAATTTTCAATGGCATTAAATA 686546 >seq303 Length=1510383 Score = 123 bits (136), Expect = 3e-23 Identities = 80/87 (92%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 449564 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGC 449505 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 449504 GTGGGTTCGAACCCCACACCTGGCAAA 449478 >seq54 Length=3381663 Score = 113 bits (124), Expect = 5e-20 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 2917730 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 2917789 Query 126327 GTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||| | ||||| Sbjct 2917790 GTTCGAACCCCACACTTAGCAAAT 2917813 >seq467 Length=2555529 Score = 100 bits (110), Expect = 3e-16 Identities = 75/87 (86%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327 |||||||||||| |||| |||||||| || ||||| |||||||||||| ||||||||||| Sbjct 1773076 AGGTTGGCCGAGCGGTCGAAGGCGCCGGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 1773135 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 |||||| ||||||| | || ||| || Sbjct 1773136 TTCGAATCCCACACTTAGCAGATTTTT 1773162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556817183877840