Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq305 156 5e-33
seq303 123 3e-23
seq54 113 5e-20
seq467 100 3e-16
>seq305
Length=1407860
Score = 156 bits (172), Expect = 5e-33
Identities = 146/186 (78%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
||||| ||||| ||||| | || |||||||| ||||| ||||| ||||| || | ||||
Sbjct 686658 ATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGG 686717
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| || |||||||| | || || || ||||| ||||| ||| ||||| || || |||
Sbjct 686718 AAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGA 686777
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
||||||||||| || ||||| || ||||||||||| || |||| ||| ||| |||||
Sbjct 686778 TTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATGAGATATGAAATGC 686837
Query 93542 TTCTCA 93547
||||||
Sbjct 686838 TTCTCA 686843
Score = 116 bits (128), Expect = 4e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
||||||||||| || | ||||| | ||||||| ||||| | ||| || || | ||||
Sbjct 686345 TCATTGCTGAACGTAAGTCCTGGCATAAGTCCTCTCTTCTTTAACCAGAAAATGGCAGCA 686404
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253
|| |||||| || || |||||||| || || |||||||| || | |||||| | |||
Sbjct 686405 AAGCTACCACTGAAGAAAATACCTTCTACTGCGGCAAATGCGACTACACGTTCAGGGAAA 686464
Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313
| |||| | | | | ||||| || || ||||||| |||||||| || ||| |||
Sbjct 686465 GTAGCGGTTTCATGGTTTATCCAATTCAATGCCCAATTAGCTTTTTTTGCAACACAGGGT 686524
Query 93314 AGTGTTTCGATAGCGTTAAATA 93335
| |||| || || |||||||
Sbjct 686525 AAATTTTCAATGGCATTAAATA 686546
>seq303
Length=1510383
Score = 123 bits (136), Expect = 3e-23
Identities = 80/87 (92%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|| ||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||
Sbjct 449564 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGC 449505
Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349
|||||||||||||||||||||| ||||
Sbjct 449504 GTGGGTTCGAACCCCACACCTGGCAAA 449478
>seq54
Length=3381663
Score = 113 bits (124), Expect = 5e-20
Identities = 77/84 (92%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326
|||||||||||| |||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 2917730 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 2917789
Query 126327 GTTCGAACCCCACACCTGACAAAT 126350
||||||||||||||| | |||||
Sbjct 2917790 GTTCGAACCCCACACTTAGCAAAT 2917813
>seq467
Length=2555529
Score = 100 bits (110), Expect = 3e-16
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327
|||||||||||| |||| |||||||| || ||||| |||||||||||| |||||||||||
Sbjct 1773076 AGGTTGGCCGAGCGGTCGAAGGCGCCGGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 1773135
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
|||||| ||||||| | || ||| ||
Sbjct 1773136 TTCGAATCCCACACTTAGCAGATTTTT 1773162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556817183877840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |