Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq467 120 2e-22 seq307 93.3 3e-14 seq459 91.5 1e-13 >seq467 Length=2555529 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | || ||||| || || || ||||| || | ||| |||||| | Sbjct 1366343 AATGCAGATCTTCGTAAAGACATTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCCTC 1366284 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| |||||| |||||||||||| | ||| | |||| Sbjct 1366283 AGACACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCA 1366224 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| ||||| ||||| |||||||||||| | |||||| | || | | || ||||| Sbjct 1366223 ACAAAGACTGATCTTCGCTGGCAAACAATTGGAAGATGGACGCACATTATCTGACTACAA 1366164 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 |||||| ||||||||||||||||| Sbjct 1366163 TATTCAAAAGGAATCTACTCTTCA 1366140 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | || ||||| || || || ||||| || | ||| |||||| | Sbjct 1366115 AATGCAGATCTTCGTAAAGACATTGACTGGAAAGACCATCACTCTCGAAGTGGAAGCATC 1366056 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| |||||| || ||||| ||| | ||| | | || Sbjct 1366055 AGATACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 1365996 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| ||| | ||||||||||| |||||| |||||||| | || | |||||||||| Sbjct 1365995 ACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGACGCACGTTATCCGATTACAA 1365936 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| || ||||| || |||||| | ||| | ||| | || || ||| Sbjct 1365935 TATTCAAAAAGAATCAACCCTTCATCTTGTACTCCGTCTCCGTGGTGGA 1365887 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | ||||| | || || ||||| || ||| ||||| || || | Sbjct 1364842 AATGCAGATATTCGTGAAAACCCTTACTGGAAAAACTATAACCTTGGAAGTTGAGGCATC 1364783 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| |||||| || ||||| ||| | ||| | | || Sbjct 1364782 TGACACCATTGAGAATGTAAAGGCTAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 1364723 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| ||| | ||||||||||| |||||| |||||||| | || | |||||||||| Sbjct 1364722 ACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGACGCACGTTATCCGATTACAA 1364663 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| || ||||| || |||||| | ||| | ||| | || || || Sbjct 1364662 TATTCAAAAAGAATCAACCCTTCATCTTGTACTCCGTCTCCGTGGTGG 1364615 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || ||||| ||||| |||||||| ||| | || || || || Sbjct 1366570 ATGCAGATTTTCGTAAAGACATTGACGGGAAAAACCATAACCCTCGAGGTTGAGGCATCA 1366511 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| |||||| ||||||||||| | || | | || Sbjct 1366510 GACACCATCGAGAATGTTAAAGCAAAAATCCAGGATAAAGAGGGCATCCCACCAGATCAG 1366451 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| ||||| |||||| |||||||| | || | | || |||||| Sbjct 1366450 CAGAGATTGATCTTCGCTGGTAAACAATTAGAAGATGGACGCACACTTTCTGACTACAAT 1366391 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || ||||||||||| ||||| | ||| | ||| | || || ||| Sbjct 1366390 ATACAAAAGGAATCTACACTTCACCTTGTACTCCGTCTCCGTGGTGGA 1366343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || | || || |||||||| || ||||| || || | Sbjct 1364386 AATGCAAATTTTTGTGAAGACTCTTACTGGAAAAACCATAACTCTGGAAGTTGAGGCGTC 1364327 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | ||| ||||||| || ||||| || | || | | || Sbjct 1364326 TGACACTATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCA 1364267 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTAC 22010 |||||| | ||||| ||||| |||||||| |||||| | | ||| | | |||||| Sbjct 1364266 GCAGAGATTAATCTTCGCTGGTAAACAACTGGAAGATGGTCGTACACTTT--CTGATTAC 1364209 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| ||||||||||| ||| | ||| | || | | |||||| Sbjct 1364208 AATATTCAGAAAGAATCTACTCTCCATTTAGTACTTCGACTCAGGGGAGGA 1364158 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 21930 AAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT 21989 ||||| ||| | ||| | | ||||| ||| | ||||||||||| |||||| |||||||| Sbjct 1365092 AAAGAAGGTATTCCTCCAGATCAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGAT 1365033 Query 21990 TTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGT 22049 | || | |||||||||||||||| || ||||| || |||||| | ||| | ||| Sbjct 1365032 GGACGCACGTTATCCGATTACAATATTCAAAAAGAATCAACCCTTCATCTTGTACTCCGT 1364973 Query 22050 TTACGAGGAGG 22060 | || || || Sbjct 1364972 CTCCGTGGTGG 1364962 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | ||||| | || || ||||| || ||| ||||| || || | Sbjct 1365431 AATGCAGATATTCGTGAAAACCCTTACTGGAAAAACTATAACCTTGGAAGTTGAGGCATC 1365372 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| |||||| || ||||| ||| | ||| | |||| Sbjct 1365371 TGACACCATTGAGAATGTAAAGGCTAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCA 1365312 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| | || ||||||||||||||| | |||||| | || | | || || || Sbjct 1365311 ACAGAGGTTGATTTTTGCTGGCAAACAATTGGAAGATGGACGCACATTATCTGACTATAA 1365252 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || || || || ||| | ||| | ||| | || || || Sbjct 1365251 CATTCAGAAAGAGTCGACACTCCATCTTGTACTTCGTCTCCGTGGTGG 1365204 >seq307 Length=2169461 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || ||| | || || |||||||| || ||||| ||||| | Sbjct 1515215 AATGCAAATCTTTGTCAAGACACTCACAGGGAAAACCATCACTCTGGAAGTCGAAGCTTC 1515274 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| ||| || || |||||||| | || | || Sbjct 1515275 TGACACAATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAGGGAATTCCCCCTCATCA 1515334 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || | ||||||||||| |||||||| |||||| || || | | |||||||| Sbjct 1515335 GCAACGATTAATCTTTGCTGGGAAACAACTTGAAGATGGAAGGACACTCTCTGATTACAA 1515394 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || ||||| || |||||| |||| || | | ||||||||| Sbjct 1515395 CATTCAAAAAGAATCCACACTTCATCTGGTTTTGAGACTTCGAGGAGGA 1515443 >seq459 Length=558815 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||| ||| | || |||||||| || ||| | |||||| | |||| || | |||| Sbjct 439488 ACCAACAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTGTCAGATT 439429 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | |||||||| ||||||||||| | ||| | || ||||||||| |||| ||| Sbjct 439428 ATAATATTCAAAAGGAATCTACATTGCATTTAGTCTTACGTTTAAGAGGTGGA 439376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358097451128164