Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq2461 104 2e-17
seq1592 104 2e-17
seq1413 104 2e-17
seq378 104 2e-17
seq672 86.0 5e-12
>seq2461
Length=589
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586
|||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||
Sbjct 277 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 218
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
||||||||||| || ||||||||||| ||| || |||||
Sbjct 217 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 178
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389
|||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||
Sbjct 277 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 218
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
||||||||||| || ||||||||||| ||| || |||||
Sbjct 217 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 178
>seq1592
Length=9461
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389
|||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||
Sbjct 7614 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 7673
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
||||||||||| || ||||||||||| ||| || |||||
Sbjct 7674 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 7713
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586
|||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||
Sbjct 7614 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 7673
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
||||||||||| || ||||||||||| ||| || |||||
Sbjct 7674 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 7713
>seq1413
Length=13777
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389
|||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||
Sbjct 3887 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 3946
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
||||||||||| || ||||||||||| ||| || |||||
Sbjct 3947 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 3986
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586
|||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||
Sbjct 3887 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 3946
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
||||||||||| || ||||||||||| ||| || |||||
Sbjct 3947 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 3986
>seq378
Length=21700
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586
|||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||
Sbjct 2075 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 2016
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
||||||||||| || ||||||||||| ||| || |||||
Sbjct 2015 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1976
Score = 104 bits (114), Expect = 2e-17
Identities = 85/100 (85%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389
|||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||
Sbjct 2075 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 2016
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
||||||||||| || ||||||||||| ||| || |||||
Sbjct 2015 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1976
>seq672
Length=26248
Score = 86.0 bits (94), Expect = 5e-12
Identities = 81/100 (81%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586
|||||||| |||||||||| ||||| ||||||||||||| | ||| ||||| || ||
Sbjct 7868 CATGTATTAGCTCTAGAATCACCACAGTTATCCAAGTAAATTGTTGTACGATCTGAGAAA 7809
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
||||||||||| || |||||| |||| || || |||||
Sbjct 7808 CCAAAACTGATGTAATGAGCCGTTCGCAGTTTCACCTTAA 7769
Score = 86.0 bits (94), Expect = 5e-12
Identities = 81/100 (81%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389
|||||||| |||||||||| ||||| ||||||||||||| | ||| ||||| || ||
Sbjct 7868 CATGTATTAGCTCTAGAATCACCACAGTTATCCAAGTAAATTGTTGTACGATCTGAGAAA 7809
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
||||||||||| || |||||| |||| || || |||||
Sbjct 7808 CCAAAACTGATGTAATGAGCCGTTCGCAGTTTCACCTTAA 7769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397032077585332
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |