Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2461 104 2e-17 seq1592 104 2e-17 seq1413 104 2e-17 seq378 104 2e-17 seq672 86.0 5e-12 >seq2461 Length=589 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| || Sbjct 277 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 218 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||||||||||| || ||||||||||| ||| || ||||| Sbjct 217 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 178 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| || Sbjct 277 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 218 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||||||||||| || ||||||||||| ||| || ||||| Sbjct 217 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 178 >seq1592 Length=9461 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| || Sbjct 7614 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 7673 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||||||||||| || ||||||||||| ||| || ||||| Sbjct 7674 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 7713 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| || Sbjct 7614 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 7673 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||||||||||| || ||||||||||| ||| || ||||| Sbjct 7674 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 7713 >seq1413 Length=13777 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| || Sbjct 3887 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 3946 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||||||||||| || ||||||||||| ||| || ||||| Sbjct 3947 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 3986 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| || Sbjct 3887 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 3946 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||||||||||| || ||||||||||| ||| || ||||| Sbjct 3947 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 3986 >seq378 Length=21700 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| || Sbjct 2075 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 2016 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||||||||||| || ||||||||||| ||| || ||||| Sbjct 2015 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1976 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| | ||| |||||||| || Sbjct 2075 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATTGTTGTACGATCTAAGAAA 2016 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||||||||||| || ||||||||||| ||| || ||||| Sbjct 2015 CCAAAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 1976 >seq672 Length=26248 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||| ||||| ||||||||||||| | ||| ||||| || || Sbjct 7868 CATGTATTAGCTCTAGAATCACCACAGTTATCCAAGTAAATTGTTGTACGATCTGAGAAA 7809 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||||||||||| || |||||| |||| || || ||||| Sbjct 7808 CCAAAACTGATGTAATGAGCCGTTCGCAGTTTCACCTTAA 7769 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||| ||||| ||||||||||||| | ||| ||||| || || Sbjct 7868 CATGTATTAGCTCTAGAATCACCACAGTTATCCAAGTAAATTGTTGTACGATCTGAGAAA 7809 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||||||||||| || |||||| |||| || || ||||| Sbjct 7808 CCAAAACTGATGTAATGAGCCGTTCGCAGTTTCACCTTAA 7769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397032077585332