Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq307 104 3e-17 seq129 102 9e-17 seq2434 98.7 1e-15 seq64 98.7 1e-15 seq467 96.9 4e-15 seq519 95.1 1e-14 seq61 95.1 1e-14 seq133 86.0 7e-12 >seq307 Length=2169461 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| | |||| || |||||||| |||||||||| || |||| | | || || Sbjct 1515880 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAGAGTGTCCTCCCATCTTCG 1515821 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | ||| ||||| || | || | | ||| |||||| | Sbjct 1515820 AGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGGTATTCCCTCTTTGTCCTGG 1515761 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || ||||| || | | ||||| | ||| || || | ||||||||||| Sbjct 1515760 ATCTTAGCTTTGACATTCTCTATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTT 1515701 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 1515700 CCTGTGAGAGTCTTGACGAAGATTTGCATT 1515671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| | |||| || |||||||| || ||||| | ||| |||| | || || Sbjct 1510755 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510696 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | ||| |||||||| | || | | || ||||| | Sbjct 1510695 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGG 1510636 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || ||||| || | | ||||| | |||||| || | ||||| ||||| Sbjct 1510635 ATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTTC 1510576 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 1510575 CCTGTGAGAGTCTTCACGAAGATTTGCATT 1510546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | | ||| |||| ||| | |||| || |||||||| |||||||||| Sbjct 1515442 CCTCCTCGAAGTCTCAAAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAG 1515383 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || || || || ||||| || || | ||| ||||| | | || Sbjct 1515382 AGTGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAGATTAATCGTTGCTGATGAGGGGGA 1515323 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| |||||| ||| ||| || | | | | ||||| | ||| || Sbjct 1515322 ATTCCCTCTTTGTCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACT 1515263 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||||||||| || || || ||||| ||||||||||||||| Sbjct 1515262 TCCAGAGTGATGGTTTTCCCTGTGAGTGTCTTGACAAAGATTTGCATT 1515215 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| | ||| || |||||||| || ||||| | ||| |||| | | || || Sbjct 1515652 ACCAGATGAAGGGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTCCCATCTTCG 1515593 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | ||| |||||||| | || | | || ||||| | Sbjct 1515592 AGCTGCTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGG 1515533 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || ||||| || | | ||||| | |||||| || | ||||| ||||| Sbjct 1515532 ATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTTC 1515473 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 1515472 CCTGTGAGAGTCTTCACGAAGATTTGCATT 1515443 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| | |||| || |||||||| || ||||| | ||| |||| | || || Sbjct 1510071 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510012 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | ||| |||||||| | || | | ||| |||||| | Sbjct 1510011 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1509952 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | | | | ||||| | ||| || || | ||||||||||| Sbjct 1509951 ATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGAGTGATGGTTTTC 1509892 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 1509891 CCTGTGAGTGTCTTCACGAAGATTTGCATT 1509862 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| | |||| || |||||||| || ||||| | ||| |||| | || || Sbjct 1510299 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510240 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | ||| |||||||| | || | | ||| |||||| | Sbjct 1510239 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1510180 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | | | | ||||| | ||| || || | ||||||||||| Sbjct 1510179 ATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTT 1510120 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 1510119 CCTGTGAGAGTCTTGACGAAGATTTGCATT 1510090 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| | |||| || |||||||| || ||||| | ||| |||| | || || Sbjct 1510527 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510468 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | ||| |||||||| | || | | ||| |||||| | Sbjct 1510467 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1510408 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | | | | ||||| | ||| || || | ||||||||||| Sbjct 1510407 ATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTT 1510348 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 1510347 CCTGTGAGAGTCTTGACGAAGATTTGCATT 1510318 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||||||||| ||||| | || |||| | || || |||||||| ||||| || Sbjct 1514715 TCTTTTTGAATATTATAATCTGAAAGTGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAAG 1514656 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||| ||||| || | || | | || || || ||| || ||||| || Sbjct 1514655 ATTAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGGATCTTAGCTTTGACATTC 1514596 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||| || | ||| || || | ||||||||||| || || || ||||| ||| Sbjct 1514595 TCTATCGTATCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGTGTCTTGACA 1514536 Query 42198 AAGATTTGCATT 42209 |||||||||||| Sbjct 1514535 AAGATTTGCATT 1514524 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| | |||| || |||||||| || ||||| | ||| |||| | || || Sbjct 1514961 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1514902 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | ||| |||||||| | || | | ||| |||||| | Sbjct 1514901 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 1514842 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | | | | ||||| | ||| || || | ||||||||||| Sbjct 1514841 ATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTTT 1514782 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 1514781 CCTGTGAGAGTCTTGACGAAGATTTGCATT 1514752 >seq129 Length=5769472 Score = 102 bits (112), Expect = 9e-17 Identities = 90/112 (80%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 56973 AGTTAACAACAAATTAACGTTT----ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACC 57028 ||||| ||| ||||| | ||| | ||||| | |||| |||| | ||||||||| Sbjct 2290249 AGTTATCAAAAAATTTAATTTTTAAAAATAAAAAAATCCTCCCCGGCGGGGAATCGAACC 2290190 Query 57029 CTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATT 57080 | ||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 2290189 CCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTACCGAGGATT 2290138 >seq2434 Length=9448 Score = 98.7 bits (108), Expect = 1e-15 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 || |||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 5546 AATAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 5487 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || ||||||||||||||||||||| Sbjct 5486 CTGACCACTATACTACCGAGGATT 5463 >seq64 Length=822164 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 388029 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 387970 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 387969 TACTACCGAGGATT 387956 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 395339 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 395280 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 395279 ATACTACCGAGGA 395267 >seq467 Length=2555529 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| |||||||| |||| || || || | || |||| || ||||||||||| Sbjct 1366380 TCCTTTTGTATATTGTAGTCAGAAAGTGTGCGTCCATCTTCTAATTGTTTACCAGCGAAG 1366439 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | || |||||| || | ||| | || ||| || ||| ||||||| ||| | || Sbjct 1366440 ATCAATCTCTGCTGATCTGGTGGGATGCCCTCTTTATCCTGGATTTTTGCTTTAACATTC 1366499 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | || || |||| || |||||||| ||||| | |||||||| Sbjct 1366500 TCGATGGTGTCTGATGCCTCAACCTCGAGGGTTATGGTTTTTCCCGTCAATGTCTTTACG 1366559 Query 42198 AAGATTTGCAT 42208 || || ||||| Sbjct 1366560 AAAATCTGCAT 1366570 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || |||||||||||||||| || || || | || || || || ||||||||||| Sbjct 1364195 TCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCCAGTTGTTTACCAGCGAAG 1364254 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||| || | ||| | || || |||| | ||| |||||| || | | Sbjct 1364255 ATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGT-CTTGAATTTTTGCCTTCACGTT 1364313 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || || || || | || |||||||| || || || ||||| || Sbjct 1364314 TTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTTTTTCCAGTAAGAGTCTTCAC 1364373 Query 42197 AAAGATTTGCATT 42209 ||| ||||||||| Sbjct 1364374 AAAAATTTGCATT 1364386 >seq519 Length=14764 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 || |||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 582 AATAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 523 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 522 CTGACCACTATACTACCGAGGA 501 >seq61 Length=1771752 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 510156 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 510097 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 510096 TACTACCGAGGAATG 510082 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 510998 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 510939 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 510938 TACTATCGAGGA 510927 >seq133 Length=1601264 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 293275 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 293216 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 293215 TACTATCGAGGA 293204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543170252857440