Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq467 89.7 5e-13
seq321 89.7 5e-13
>seq467
Length=2555529
Score = 89.7 bits (98), Expect = 5e-13
Identities = 162/232 (70%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || | ||| | | |||| || |||||||| ||||| |||
Sbjct 1364615 CCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGG-- 1364672
Query 138448 ATAGTACGCGAGTCC----TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503
||| ||| | |||| || | ||||||||| | | |||| | | ||||| || ||
Sbjct 1364673 ATA--ACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGG 1364730
Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACT 138562
||| |||||||||||||| ||| |||| | |||| | || | |||||| | | ||
Sbjct 1364731 AGGAATACCTTCTTTGTC-CTGAATTTTAGCCTTTACATTCTCAATGGTGTCAGATGCCT 1364789
Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || || | || | ||||| ||||| || ||||| || || ||||||||
Sbjct 1364790 CAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACGAATATCTGCAT 1364841
Score = 89.7 bits (98), Expect = 5e-13
Identities = 162/232 (70%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || | ||| | | |||| || |||||||| ||||| |||
Sbjct 1365888 CCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGG-- 1365945
Query 138448 ATAGTACGCGAGTCC----TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503
||| ||| | |||| || | ||||||||| | | |||| | | ||||| || ||
Sbjct 1365946 ATA--ACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGG 1366003
Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACT 138562
||| |||||||||||||| ||| |||| | ||||| | ||| | || || | | |
Sbjct 1366004 AGGAATACCTTCTTTGTC-CTGAATTTTGGCTTTAACATTTTCAATTGTATCTGATGCTT 1366062
Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| |||| || | || || ||||||| || ||||| || ||||||||
Sbjct 1366063 CCACTTCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTACGAAGATCTGCAT 1366114
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465
|||||||| | | || || || ||||| ||||| || | ||||| || ||
Sbjct 1364177 ACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCC 1364236
Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525
||||||||||| | |||||| | ||| || || || || || ||||||||||| ||
Sbjct 1364237 AGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTC-TTG 1364295
Query 138526 ATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584
| |||||| || | | ||| | ||||| | || ||| || || | || | |||||
Sbjct 1364296 AATTTTTGCCTTCACGTTTTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTTTT 1364355
Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| ||||| || |||||||| |||||
Sbjct 1364356 TCCAGTAAGAGTCTTCACAAAAATTTGCAT 1364385
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479
||||| || |||||||| ||||| | | || || || || || | |||||| || |
Sbjct 1365237 GACTCTTTCTGAATGTTATAGTCAGATAAT-GTGCGTCCATCTTCCAATTGTTTGCCAGC 1365295
Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTA 138538
| | || | | ||||||||| ||||| |||||||||||||| ||| |||| | ||||
Sbjct 1365296 AAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTC-CTGAATTTTAGCCTTTA 1365354
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | |||||| | | ||| || || | || | ||||| ||||| || ||||
Sbjct 1365355 CATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTT 1365414
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 1365415 TCACGAATATCTGCAT 1365430
>seq321
Length=1097274
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
|| || | |||||| || | | |||||||||||||| || || || || ||||||||
Sbjct 785306 TCTTCTAATTGTTTTCCAGCGAAAATTAGACGCTGTTGATCAGGTGGAATTCCTTCTTTA 785365
Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578
|| ||| |||| | ||||| | ||| | ||| || | || || ||||||| ||| |
Sbjct 785366 TC-TTGAATTTTAGCTTTTACATTTTCGATGGTATCAGACGCTTCTACCTCGAGCGTGAT 785424
Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || |||| |||||| || || ||||||||
Sbjct 785425 AGTTTTGCCCGTCAAAGTTTTCACGAATATCTGCAT 785460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496223530247520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |