Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq467 89.7 5e-13 seq321 89.7 5e-13 >seq467 Length=2555529 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | |||| || |||||||| ||||| ||| Sbjct 1364615 CCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGG-- 1364672 Query 138448 ATAGTACGCGAGTCC----TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 ||| ||| | |||| || | ||||||||| | | |||| | | ||||| || || Sbjct 1364673 ATA--ACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGG 1364730 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACT 138562 ||| |||||||||||||| ||| |||| | |||| | || | |||||| | | || Sbjct 1364731 AGGAATACCTTCTTTGTC-CTGAATTTTAGCCTTTACATTCTCAATGGTGTCAGATGCCT 1364789 Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || | || | ||||| ||||| || ||||| || || |||||||| Sbjct 1364790 CAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACGAATATCTGCAT 1364841 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | |||| || |||||||| ||||| ||| Sbjct 1365888 CCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGG-- 1365945 Query 138448 ATAGTACGCGAGTCC----TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 ||| ||| | |||| || | ||||||||| | | |||| | | ||||| || || Sbjct 1365946 ATA--ACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGG 1366003 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACT 138562 ||| |||||||||||||| ||| |||| | ||||| | ||| | || || | | | Sbjct 1366004 AGGAATACCTTCTTTGTC-CTGAATTTTGGCTTTAACATTTTCAATTGTATCTGATGCTT 1366062 Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| |||| || | || || ||||||| || ||||| || |||||||| Sbjct 1366063 CCACTTCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTACGAAGATCTGCAT 1366114 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||||||| | | || || || ||||| ||||| || | ||||| || || Sbjct 1364177 ACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCC 1364236 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||||||||| | |||||| | ||| || || || || || ||||||||||| || Sbjct 1364237 AGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTC-TTG 1364295 Query 138526 ATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | |||||| || | | ||| | ||||| | || ||| || || | || | ||||| Sbjct 1364296 AATTTTTGCCTTCACGTTTTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTTTT 1364355 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| || |||||||| ||||| Sbjct 1364356 TCCAGTAAGAGTCTTCACAAAAATTTGCAT 1364385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 ||||| || |||||||| ||||| | | || || || || || | |||||| || | Sbjct 1365237 GACTCTTTCTGAATGTTATAGTCAGATAAT-GTGCGTCCATCTTCCAATTGTTTGCCAGC 1365295 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTA 138538 | | || | | ||||||||| ||||| |||||||||||||| ||| |||| | |||| Sbjct 1365296 AAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTC-CTGAATTTTAGCCTTTA 1365354 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | | ||| || || | || | ||||| ||||| || |||| Sbjct 1365355 CATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTT 1365414 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 1365415 TCACGAATATCTGCAT 1365430 >seq321 Length=1097274 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | |||||| || | | |||||||||||||| || || || || |||||||| Sbjct 785306 TCTTCTAATTGTTTTCCAGCGAAAATTAGACGCTGTTGATCAGGTGGAATTCCTTCTTTA 785365 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||||| | ||| | ||| || | || || ||||||| ||| | Sbjct 785366 TC-TTGAATTTTAGCTTTTACATTTTCGATGGTATCAGACGCTTCTACCTCGAGCGTGAT 785424 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || |||| |||||| || || |||||||| Sbjct 785425 AGTTTTGCCCGTCAAAGTTTTCACGAATATCTGCAT 785460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496223530247520