Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq467 104 2e-17 seq307 89.7 4e-13 >seq467 Length=2555529 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| | ||| | || ||||||||| ||||| ||||||| Sbjct 1365888 CCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGAT 1365947 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| |||| || |||||||| || |||| || || | || ||||| | || Sbjct 1365948 AACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGA 1366007 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||||| | | | ||| |||| |||||| Sbjct 1366008 ATACCTTCTTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTATCTGATGCTTCCACT 1366067 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || || || || || ||||||||||||||||| Sbjct 1366068 TCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTACGAAGATCTGCAT 1366114 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCA 39585 ||||||||| ||||||||||| | ||| | ||| |||| |||||||| || || || Sbjct 1365695 TTCTTTTTGGATATTATAATCAG--AAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCA 1365752 Query 39586 AAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATC 39645 || ||||| | |||||| || | || | ||||| ||||| ||||| ||| | Sbjct 1365753 AAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACG 1365812 Query 39646 GTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704 | | | || || | ||| || || ||||| || |||||||| || || | ||||| Sbjct 1365813 TTTTCAATGGTATCGGACGC-CTCAACTTCCAATGTTATTGTTTTTCCAGTAAGTGTTTT 1365871 Query 39705 TACGAAGATCTGCAT 39719 ||||||||||||||| Sbjct 1365872 TACGAAGATCTGCAT 1365886 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| | ||| | || ||||||||| ||||| ||||||| Sbjct 1364615 CCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGAT 1364674 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| |||| || |||||||| || |||| || || | || ||||| | || Sbjct 1364675 AACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGA 1364734 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||||||||| | | |||| | |||| || || | | ||||| | || Sbjct 1364735 ATACCTTCTTTGTC-CTGAATTTTAGCCTTTACAT--TCTCAATGGTGTCAGATGCCTCA 1364791 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 1364792 ACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACGAATATCTGCAT 1364841 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCA 39585 ||||||||| ||||||||||| | ||| | ||| |||| |||||||| || || || Sbjct 1365467 TTCTTTTTGGATATTATAATCAG--AAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCA 1365524 Query 39586 AAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATC 39645 || ||||| | |||||| || | || | ||||| ||||| ||||| ||| | Sbjct 1365525 AAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACA 1365584 Query 39646 GTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704 | | | ||||||| ||| || || ||||| || || ||||| || || | ||||| Sbjct 1365585 TTTTCAATGGTGTCTGACGC-CTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTT 1365643 Query 39705 TACGAAGATCTGCAT 39719 ||||| |||||||| Sbjct 1365644 CACGAATATCTGCAT 1365658 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||||||||| || || | | |||| |||| || |||||||| || | || Sbjct 1366379 TTCCTTTTGTATATTGTAGTCAGAAAGTGTGCGTCCATCTTCTAATTGTTTACCAGCGAA 1366438 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || || | ||||||||| | || | ||| ||||| || |||||| ||||| | Sbjct 1366439 GATCAATCTCTGCTGATCTGGTGGGATGCCCTCTTTATCCTGGATTTTTGCTTTAACATT 1366498 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||||| || || || | || || ||||| ||||| || || ||||| Sbjct 1366499 CTCGATGGTGTCTGATGCCTCAACCTCGAGGGTTATGGTTTTTCCCGTCAATGTCTTTAC 1366558 Query 39708 GAAGATCTGCATG 39720 ||| ||||||||| Sbjct 1366559 GAAAATCTGCATG 1366571 >seq307 Length=2169461 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||| ||| | ||| ||||||||| || |||||||| | || | | |||| Sbjct 1510758 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCT 1510699 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | || ||||| |||| ||||| || ||||| || | || | ||||||||||| Sbjct 1510698 TCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCT 1510639 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 || || ||| | || ||| |||||||| | |||||| || | || || ||| Sbjct 1510638 TGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTT 1510579 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | ||| || |||||||| ||||| Sbjct 1510578 TTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1510547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347343072469178