Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq467 104 2e-17
seq307 89.7 4e-13
>seq467
Length=2555529
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| ||||| | ||| | || ||||||||| ||||| |||||||
Sbjct 1365888 CCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGAT 1365947
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| |||| |||| || |||||||| || |||| || || | || ||||| | ||
Sbjct 1365948 AACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGA 1366007
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||||||||| ||||| ||||| | | | ||| |||| ||||||
Sbjct 1366008 ATACCTTCTTTGTCCTGAATTTTGGCTTTAACATTTTCAATTGTATCTGATGCTTCCACT 1366067
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||| || || || || || || || |||||||||||||||||
Sbjct 1366068 TCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTACGAAGATCTGCAT 1366114
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCA 39585
||||||||| ||||||||||| | ||| | ||| |||| |||||||| || || ||
Sbjct 1365695 TTCTTTTTGGATATTATAATCAG--AAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCA 1365752
Query 39586 AAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATC 39645
|| ||||| | |||||| || | || | ||||| ||||| ||||| ||| |
Sbjct 1365753 AAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACG 1365812
Query 39646 GTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704
| | | || || | ||| || || ||||| || |||||||| || || | |||||
Sbjct 1365813 TTTTCAATGGTATCGGACGC-CTCAACTTCCAATGTTATTGTTTTTCCAGTAAGTGTTTT 1365871
Query 39705 TACGAAGATCTGCAT 39719
|||||||||||||||
Sbjct 1365872 TACGAAGATCTGCAT 1365886
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| ||||| | ||| | || ||||||||| ||||| |||||||
Sbjct 1364615 CCACCACGGAGACGGAGTACAAGATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGAT 1364674
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| |||| |||| || |||||||| || |||| || || | || ||||| | ||
Sbjct 1364675 AACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGA 1364734
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| ||||||||||| | | |||| | |||| || || | | ||||| | ||
Sbjct 1364735 ATACCTTCTTTGTC-CTGAATTTTAGCCTTTACAT--TCTCAATGGTGTCAGATGCCTCA 1364791
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| ||||| || || ||||| || || | ||||| ||||| ||||||||
Sbjct 1364792 ACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACGAATATCTGCAT 1364841
Score = 87.8 bits (96), Expect = 1e-12
Identities = 139/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCA 39585
||||||||| ||||||||||| | ||| | ||| |||| |||||||| || || ||
Sbjct 1365467 TTCTTTTTGGATATTATAATCAG--AAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCA 1365524
Query 39586 AAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATC 39645
|| ||||| | |||||| || | || | ||||| ||||| ||||| ||| |
Sbjct 1365525 AAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACA 1365584
Query 39646 GTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704
| | | ||||||| ||| || || ||||| || || ||||| || || | |||||
Sbjct 1365585 TTTTCAATGGTGTCTGACGC-CTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTT 1365643
Query 39705 TACGAAGATCTGCAT 39719
||||| ||||||||
Sbjct 1365644 CACGAATATCTGCAT 1365658
Score = 87.8 bits (96), Expect = 1e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587
||| ||||||||||| || || | | |||| |||| || |||||||| || | ||
Sbjct 1366379 TTCCTTTTGTATATTGTAGTCAGAAAGTGTGCGTCCATCTTCTAATTGTTTACCAGCGAA 1366438
Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647
|| || | ||||||||| | || | ||| ||||| || |||||| ||||| |
Sbjct 1366439 GATCAATCTCTGCTGATCTGGTGGGATGCCCTCTTTATCCTGGATTTTTGCTTTAACATT 1366498
Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | | ||||||| || || || | || || ||||| ||||| || || |||||
Sbjct 1366499 CTCGATGGTGTCTGATGCCTCAACCTCGAGGGTTATGGTTTTTCCCGTCAATGTCTTTAC 1366558
Query 39708 GAAGATCTGCATG 39720
||| |||||||||
Sbjct 1366559 GAAAATCTGCATG 1366571
>seq307
Length=2169461
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| |||| ||| | ||| ||||||||| || |||||||| | || | | ||||
Sbjct 1510758 AGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCT 1510699
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
|| | || ||||| |||| ||||| || ||||| || | || | |||||||||||
Sbjct 1510698 TCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCT 1510639
Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687
|| || ||| | || ||| |||||||| | |||||| || | || || |||
Sbjct 1510638 TGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTT 1510579
Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || | ||| || |||||||| |||||
Sbjct 1510578 TTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1510547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347343072469178
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |