Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq307 102 8e-17
seq321 98.7 1e-15
seq467 84.2 2e-11
>seq307
Length=2169461
Score = 102 bits (112), Expect = 8e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||| || || ||||| || |||||||||||| | || ||||| || |
Sbjct 1515671 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1515730
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | |||| || |||| |||||||||||||| || | || ||
Sbjct 1515731 TGACACAATAGAGAATGTCAAAGCTAAGATCCAGGACAAAGAGGGAATACCTCCAGATCA 1515790
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || | || | || || || ||||| || || | | | || ||| || |||||
Sbjct 1515791 GCAACGATTAATCTTTGCAGGAAAGCAGCTCGAAGATGGGAGGACACTCTCTGATTACAA 1515850
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
||| ||||| ||| | || || ||| |||| |||
Sbjct 1515851 CATTCAAAAAGAATCCACACTTCATCTGGTTCTG 1515884
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||| || || ||||| || |||||||||||| | || ||||| || |
Sbjct 1510090 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1510149
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | ||| | || | || |||| |||||||||||||| || | |||||
Sbjct 1510150 TGACACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1510209
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 38420
|| || | || | || || || ||||| || || | || ||| ||| || ||
Sbjct 1510210 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GATTAT 1510267
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
||||| ||||| ||| | || || ||| |||| ||
Sbjct 1510268 AACATTCAAAAAGAATCCACACTTCATCTGGTTCT 1510302
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||| || || ||||| || |||||||||||| | || ||||| || |
Sbjct 1510318 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1510377
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | ||| | || | || |||| |||||||||||||| || | |||||
Sbjct 1510378 TGACACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1510437
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 38420
|| || | || | || || || ||||| || || | || ||| ||| || ||
Sbjct 1510438 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GATTAT 1510495
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
||||| ||||| ||| | || || ||| |||| ||
Sbjct 1510496 AACATTCAAAAAGAATCCACACTTCATCTGGTTCT 1510530
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||| || || ||||| || |||||||||||| | || ||||| || |
Sbjct 1514752 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1514811
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | ||| | || | || |||| |||||||||||||| || | |||||
Sbjct 1514812 TGACACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1514871
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 38420
|| || | || | || || || ||||| || || | || ||| ||| || ||
Sbjct 1514872 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GATTAT 1514929
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
||||| ||||| ||| | || || ||| |||| ||
Sbjct 1514930 AACATTCAAAAAGAATCCACACTTCATCTGGTTCT 1514964
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| || || || || ||||| || ||||||||||| | || ||||| || |
Sbjct 1515215 AATGCAAATCTTTGTCAAGACACTCACAGGGAAAACCATCACTCTGGAAGTCGAAGCTTC 1515274
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | ||| | || | ||| |||| |||||||||||||||||| | | ||
Sbjct 1515275 TGACACAATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAGGGAATTCCCCCTCATCA 1515334
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || | || | || || ||||| || || || | | || ||| || |||||
Sbjct 1515335 GCAACGATTAATCTTTGCTGGGAAACAACTTGAAGATGGAAGGACACTCTCTGATTACAA 1515394
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452
||| ||||| ||| | || || ||| ||||
Sbjct 1515395 CATTCAAAAAGAATCCACACTTCATCTGGT 1515424
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||| || || ||||| || ||||||||||| | || ||||| || |
Sbjct 1509862 AATGCAAATCTTCGTGAAGACACTCACAGGGAAAACCATCACTCTGGAAGTCGAAGCTTC 1509921
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | ||| | || | || |||| |||||||||||||| || | |||||
Sbjct 1509922 TGACACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1509981
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 38420
|| || | || | || || || ||||| || || | || ||| ||| || ||
Sbjct 1509982 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCA--GATTAT 1510039
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
||||| ||||| ||| | || || ||| |||| ||
Sbjct 1510040 AACATTCAAAAAGAATCCACACTTCATCTGGTTCT 1510074
Score = 89.7 bits (98), Expect = 5e-13
Identities = 152/221 (69%), Gaps = 7/221 (3%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||| || || ||||| || |||||||||||| | || ||||| || |
Sbjct 1514980 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1515039
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | ||| | || | ||| |||| |||||||||||||| || | |||||
Sbjct 1515040 TGACACAATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 1515099
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-------G 38415
|| || | || | || || || ||||| || || | | || |||||| |
Sbjct 1515100 GCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTCAACACTCTCAG 1515159
Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
| || || || ||||| ||| | || || || | ||||||
Sbjct 1515160 ATTATAATATTCAAAAAGAATCAACACTTCACCTTGTGCTG 1515200
>seq321
Length=1097274
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/191 (72%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| |||||||| ||||| | ||||||||||| ||||| |||| || || || |
Sbjct 785460 ATGCAGATATTCGTGAAAACTTTGACGGGCAAAACTATCACGCTCGAGGTAGAAGCGTCT 785401
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | ||| | |||| ||||| | || ||||| |||||||| | || |||
Sbjct 785400 GATACCATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAA 785341
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| || ||||| | || || | || |||||| || || ||
Sbjct 785340 CAGCGTCTAATTTTCGCTGGAAAACAATTAGAAGATGGACGTACCCTCTCTGATTATAAT 785281
Query 38424 ATCCA-AAAGG 38433
||||| |||||
Sbjct 785280 ATCCAGAAAGG 785270
>seq467
Length=2555529
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/218 (69%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||||||||| || || || ||||| || || | || || ||||| |
Sbjct 1365887 AATGCAGATCTTCGTAAAAACACTTACTGGAAAAACAATAACATTGGAAGTTGAGGCGTC 1365828
Query 38303 CGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
||| | | || ||||| | |||| ||||||| ||||| || || || || | ||||
Sbjct 1365827 CGATACCATTGAAAACG-TGAAAGCTAAAATCCAGGACAAGGAAGGTATCCCTCCAGACC 1365769
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||| | | || | || ||||| || |||| || | || || || || || |
Sbjct 1365768 AGCAGAGATTAATCTTTGCTGGCAAGCAATTGGAAGATGGACGTACACTTTCTGATTATA 1365709
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
| |||||||| ||| | || || ||| | || || |||
Sbjct 1365708 ATATCCAAAAAGAATCAACCCTTCATCTCGTTCTCCGT 1365671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500133623965440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |