Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq247 425 7e-114 seq3388 280 2e-70 seq31 140 4e-28 seq540 89.7 7e-13 >seq247 Length=453697 Score = 425 bits (470), Expect = 7e-114 Identities = 995/1482 (67%), Gaps = 27/1482 (2%) Strand=Plus/Minus Query 6496 TTCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCT 6554 ||| || || | ||||| |||| | ||||| ||||||| |||||| || ||| Sbjct 186903 TTCCACTGTACTCTTCATGTTGA-AGCAGTAAGACTCGAGACTATTCTTAGCAGCGATAG 186845 Query 6555 TTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAA 6614 ||| | | ||||||||||||| ||| || || || || | ||||||| |||| | Sbjct 186844 TTTCCTTTTGCTTTTCATCTTCACTACGATATTTCTCAGCTTCGTTGACCATCCTTTCGA 186785 Query 6615 TGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCG 6674 | |||||||| | | ||||| ||||| || || || || || | |||||| | Sbjct 186784 TATCTTCTTTACTGAGACGGCCCTTGTCATTGGTGATGGTGATTTTATTTTCTTTACCAG 186725 Query 6675 AGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACAT 6734 | || || | || || |||| ||||| || || || | || || | || | Sbjct 186724 TAGATTTGTCCACTGCCGAGACGTTCAGGATACCGTTGGCGTCGATGTCAAAGGTGACTT 186665 Query 6735 TAATTTGTGGTGTACCCCTCGGTGCG--GCTGGAATACCCGTTAAATCAAATGTACCAAG 6792 ||||| || || |||||| | | | ||||||||| | | |||||| |||| | Sbjct 186664 CGATTTGAGGA--ACTCCTCGGGGAGCTGGTGGAATACCACTGAGCTCAAATTTACCTAA 186607 Query 6793 TAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGG 6852 | | |||| || ||| | | ||| || ||||| ||||||| || || | || Sbjct 186606 CAGATTGTTGTCTTTCGTCATTGCACGCTCTCCTTCGTAGACTTGGATCAATACACCTGG 186547 Query 6853 TTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCT 6912 ||| ||||| ||| | |||| |||| || ||| | |||||| || |||||||| Sbjct 186546 TTGGTTATCAGCGTACGTGGTGAAGGTTTGCGTTTGCTTTGTTGGAATGGTTGTATTTCT 186487 Query 6913 CGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCAC 6972 | || | | |||||| | |||||| |||||||| |||||||||| |||||| || Sbjct 186486 CTTGATGAGAGCGGTCATCACACCACCAGCAGTTTCGATACCAAGAGACAAAGGTGTAAC 186427 Query 6973 GTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAG-ATGGCGGCTT 7031 || | || ||||||||||| || ||| | ||| |||| || || || |||| Sbjct 186426 ATCGAGAAGCAACAGGTCTTGTACTTCTTCAGACTTATCA-CCGTGCAGAATTGCAGCTT 186368 Query 7032 GGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTAC 7091 | || | || || || || || ||||| || |||||||| | ||| |||||||| || | Sbjct 186367 GTACGGCAGCTCCATAAGCCACAGCCTCGTCAGGGTTAATGGATTTGTTCAGTTCCTTTC 186308 Query 7092 CGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCA 7151 |||| || |||| ||| | || ||||| || || || ||||| |||||||| |||| Sbjct 186307 CGTTGAAGAAATCTTGTAAGAGTTTCTGAATCTTAGGAATACGTGTTGATCCACCAACCA 186248 Query 7152 AAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAG 7211 ||||||| || | | || | |||||| || || | || || || | ||| || || | Sbjct 186247 AAACGATATCGTGAATTTGAGCTTTATCCATTTTAGCATCGCGCAGCGATTTCTCCACTG 186188 Query 7212 GTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGG 7271 | || | | | ||| | || || || || || ||||| || | ||| || | Sbjct 186187 GCTCTAGTGTTCCTCTGAATAGATCAGCGCAGAGCTCTTCGAAACGAGCCCTGGTGATCG 186128 Query 7272 ATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCG 7331 | || |||||||||| || || || | |||||| ||||| ||| | | ||| | | || Sbjct 186127 AAGTGTAGAAATCAATTCCCTCATAGAGCGAATCGATTTCGATGCTAGCTTGAGTGGACG 186068 Query 7332 AAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGT 7391 |||||||||| || || || |||||||| ||||||| || |||||||||||||||| | Sbjct 186067 AAGATAACGTGCGTTTCGCACGCTCACAAGCCGTTCTTAGACGACGAAGGGCACGCTTAT 186008 Query 7392 TACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAG--AGAAGTGTCGAAGGAG 7449 | | | || ||||| | ||||||||| || || ||| ||| || | | Sbjct 186007 TCGAGACGAGGTCCTTCTTGTATTTACGTTTGAATTC--CAGGACGAAATGATTGACCAT 185950 Query 7450 TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA 7509 || |||||| ||||| || || | || || || || || || | ||||| || || Sbjct 185949 TCGGTTATCGAAGTCTTCGCCGCCAAGATGAGTGTCTCCTGCTGTAGACTTGACCTCGAA 185890 Query 7510 GATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 || || ||||||| | || | || ||||| || || |||||||| || ||||| || Sbjct 185889 AATGCCATCTTCAATAGTCAAAATAGACACATCGAAGGTGCCACCACCAAGATCAAAGAT 185830 Query 7570 GAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 || ||||| || | | | |||||||| | ||| || || || || || || || Sbjct 185829 TAGGACGTTGCGCTCATTGGTGGTTTTCTTATCTAAACCATAAGCAATGGCAGCAGCGGT 185770 Query 7630 TGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 || ||||| || ||||| | | ||||| ||| | || || | || || || || || Sbjct 185769 GGGCTCATTGATGATACGTAAAACGTTCAAGCCCGAGATGGTACCAGCGTCCTTGGTTGC 185710 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 || || ||||| ||||| ||||| || || || || | || || | ||||| |||| Sbjct 185709 CTGACGCTGCGAGTCGTTGAAGTAAGCAGGTACAGTGATCACAGCATTAGTGACGGTCTT 185650 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATC---TC 7806 ||||| || | || || | || ||||| || || ||||| |||| || || Sbjct 185649 CCCGAGGTATGCCTCAGCAGTTTCCTTCATCTTCACCAGGACCAT---TGAACTCACTTC 185593 Query 7807 TTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG 7865 ||||| | | | || ||||| || || || | | |||| ||| ||||||| || Sbjct 185592 TTCAG-GGAAGAAAGTCTTCGTCTCTCCTTTGTAGTGTACTTGGATCTTGGGTTT-TC-- 185537 Query 7866 CAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGT-TGGTCC 7924 || || || ||||| | | | ||||| ||||||||| | | || |||| |||| Sbjct 185536 CACCATCGTTTATAACGGTGAATGGCCAATGTTTCATATCAGCCT-GAACTGTAGGGTCT 185478 Query 7925 GAAAACTTTCTTCCGATAAGACGCTTTGCATC--AAAAACTG 7964 ||| | ||| ||||| ||||| ||||| ||||| || Sbjct 185477 TCGAACCGACGTCCAATAAGGCGCTTGGCATCTGAAAAATTG 185436 Score = 82.4 bits (90), Expect = 1e-10 Identities = 133/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| ||||| |||||||||||||| ||||||||| || || || ||||| | ||| Sbjct 184764 AAAATGGTGTTGTTGGGGTTCATGGCGACTTGGTTCTTGGCAGCATCGCCGATTAACCGT 184705 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || ||||| || ||||| || || || || || ||||| || || || Sbjct 184704 TC---GGTGTCTGTAAATGCAACGTAGCTAGGTGTAGTACGGTTTCCTTGATCATTGGCG 184648 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 || ||||| || | | || | || || ||||| ||||| || || || | |||| Sbjct 184647 ATGATTTCCACTTTTCCATGCTGGAATACTCCAACGCAGGAATAGGTGGTGCCGAGATCA 184588 Query 8138 ATACCGATTGC 8148 ||||| | ||| Sbjct 184587 ATACCAACTGC 184577 >seq3388 Length=1606789 Score = 280 bits (310), Expect = 2e-70 Identities = 732/1107 (66%), Gaps = 22/1107 (2%) Strand=Plus/Minus Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC--GGTGCGGC 6762 |||| || | ||| | |||||| | || | || || || ||||||| || || | Sbjct 137011 TACCGTTCGAATCGATATCGAAAGTAACTTCGATCTGAGGA--ACCCCTCTAGGCGCAGG 136954 Query 6763 TGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTC 6822 ||||||||| || | || ||| | || || | | | || || | | | | | ||| Sbjct 136953 TGGAATACCGGTAAGCTCGAATTTTCCTAGAATATTATTGTCTTTGGTCATGGCTCTTTC 136894 Query 6823 ACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATT 6880 ||||| || |||| ||| | ||||| ||||||||||| || | |||| || Sbjct 136893 TCCTTCGTATACTTGAATCAAGACACCG--GGTTGATTATCCGAATAGGTGGTGAAGGTT 136836 Query 6881 TGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCC 6940 || || || | || || ||||| || ||| || | | ||||| | ||| || Sbjct 136835 TGCGTTTGTTTGGTCGGTATGGTCGTGTTCCTCTTGATCAAAGTAGTCATTACACCGCCA 136776 Query 6941 ATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG---TCTTGAACA 6997 ||||||| || || |||| || || || |||| ||||||| |||||||| Sbjct 136775 GCTGTTTCGATACCCAGGGACAATGGCGTGACATCCA---GTAACAGCAAATCTTGAACC 136719 Query 6998 GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCC 7057 | ||| | || || |||||||| ||||| || | || || || || || || Sbjct 136718 GCCTCGGACTTGTCGCCGTGCAAGATGGCAGCTTGCACAGCGGCTCCATAGGCTACAGCT 136659 Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGT 7117 || || || || || | ||| |||| ||||| ||||| || | || | | || | Sbjct 136658 TCGTCCGGATTGATGGATTTGTTCAACTCTTTGCCGTTGAAGAAGTCTTGCAGTAATTTT 136599 Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177 ||||| || || |||| |||||||||||||| | ||||| | |||| || ||| Sbjct 136598 TGAATCTTTGGTATTCTAGTCGATCCACCGACTAGTACGATACTGTGAACTTGAGACTTA 136539 Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAG 7234 || ||||| | ||| | | | || || || ||||| | ||| | | ||||| Sbjct 136538 TCCATCTTAGCGTCCCTCAAAGCCTTCTCCACGGGTTCTAGGGTAC---TCCTGAACAGA 136482 Query 7235 TCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCG 7294 ||| || ||||| || || || || | ||||||||| ||||||||||| | || ||| Sbjct 136481 TCCGAGCAAAGTTCTTCGAATCGAGCCCTGGTAATGGAAGTATAGAAATCGATACCCTCG 136422 Query 7295 TATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGC 7354 | | ||||| ||||| || | | ||| | | ||| | |||| ||| || | | Sbjct 136421 AACAGAGAATCGATTTCGATACTCGCTTGCGTGGACGAGCTCAGGGTTCTCTTCGCTCTC 136362 Query 7355 TCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGT 7414 || || || |||| | || | || || | | ||| || | ||| ||||| | | Sbjct 136361 TCGCAGGCTGTTCTCAGTCGTCTGAGTGCTCTCTTGTTCACGCTCAGATCCTTCTTGTAT 136302 Query 7415 TTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCC 7474 || | || || || | |||||| | | | ||||| || || || || Sbjct 136301 TTCCTCTTGAATTCCTGCTCGAAGTGATTCACCATACGATTGTCGAAGTCCTCTCCTCCA 136242 Query 7475 AAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAAC 7534 | ||| || || || || |||| ||| || || |||||||| | || ||| | | | | Sbjct 136241 AGGTGAGTGTCTCCTGCCGTCGATTTCACCTCGAAGATACCATCCTCGATGGTCAGGATC 136182 Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || ||||| || |||||||| ||||||||||| || | |||||| | ||| | | | Sbjct 136181 GACACATCGAAGGTACCACCTCCCAGGTCAAAGATCAAAACGTTCTTTTCGCCCGATGTC 136122 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 | ||||| | || || ||||| || ||||| || ||||| || || || | || ||| Sbjct 136121 CTTTTATCTAAGCCATAAGCGATCGCTGCCGCGGTCGGTTCGTTGATGATTCTCAAAACA 136062 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||||| ||||| || | | | || |||||||| ||||||| ||||||||||| ||||| Sbjct 136061 -TTCAGACCAGCTATCGCTCCTGCGTCTTTCGTGGCTTGTCTCTGCGAATCGTTGAAGTA 136003 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || || || || | || || | || ||| |||| || | ||||| |||||| | || Sbjct 136002 CGCTGGCACGGTGATCACGGCATTGGTCACTGTCTTCCCCAAATACGCTTCCGCCGTTTC 135943 Query 7774 TTTCATTTTGGTAAGAACCATCGATGA 7800 ||||| || || ||||||||||| || Sbjct 135942 CTTCATCTTCGTTAGAACCATCGAAGA 135916 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/186 (71%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| |||| |||||||| || || |||||||| || ||||| || | ||| | Sbjct 135242 GTGTTGGTGGGATTCATGGCGACCTGATTTTTCGCCGCATCGCCGATTAGCCTTTCGGTG 135183 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | | ||||| || ||||| || ||||||||||| ||||| || || ||||| || Sbjct 135182 TCT---GTAAAGGCAACGTAACTCGGCGTCGTTCGATTTCCTTGATCATTTGCAATGATC 135126 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCG 8143 || || | | || |||| || ||||| || || |||||||||||||| || || Sbjct 135125 TCAACCTTTCCATGCTGGAAGACACCCACGCAGGAGTAGGTTGTTCCTAAATCGATTCCA 135066 Query 8144 ATTGCT 8149 | |||| Sbjct 135065 ACTGCT 135060 >seq31 Length=2718342 Score = 140 bits (154), Expect = 4e-28 Identities = 197/274 (72%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 6640 ATCATTCGTAATCGTAATCTTTTCG-GATTTACCCGAGGCCTTATCTTCAGCACTTACAT 6698 |||||| ||||| |||||| ||| ||||| || | | ||||||||||| ||| | Sbjct 1222640 ATCATTGGTAATAACAATCTTCTCGCGATTT-CCAGTTCCTTTATCTTCAGCGGATACTT 1222582 Query 6699 TCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTG 6758 | ||||||||| ||||||| ||||| | || | |||||||||| | || | |||| Sbjct 1222581 GAAGAATACCATTAGCATCAATTTCGAAAGTGACTTCAATTTGTGGTATTCCTCGAGGTG 1222522 Query 6759 CGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTAC 6818 | | ||||||||| || | ||| ||| ||||||| | | || || | | | | || Sbjct 1222521 CCGGTGGAATACCAGTAAGATCGAATTTACCAAGAAGATGATTGTCTTTTGTCATTGGAC 1222462 Query 6819 GTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGA 6878 ||||||||||||| |||| || || || | | ||||||||||| ||||| ||||| | Sbjct 1222461 GTTCACCTTCATATACTTGGATCGTAACGGTATGTTGATTATCTGACGCCGTAGAGAAAA 1222402 Query 6879 TTTGTTCTTTCTTAGATGGAATCGTCGTATTTCT 6912 |||| ||| || | ||||| |||||||| Sbjct 1222401 TTTGCGATTTTTTCGTCGGAATGACAGTATTTCT 1222368 >seq540 Length=246768 Score = 89.7 bits (98), Expect = 7e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 11439 ACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTC 11498 || ||||||| | |||| ||||| |||||||| ||||| | || || || || | Sbjct 136470 ACCTCTTTTCCTTCCAACGGCATCGATTTCATCAATAAATAATATGCATGGAGCATGCTT 136529 Query 11499 ACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAAC 11558 ||||||| | |||| || ||||| ||||| | || || || ||||||||||| | Sbjct 136530 TCGTGCCATTGCAAACATGTCACGAACTCTCGAAGGACCAACACCGACAAACATTTCCAG 136589 Query 11559 GAACGATGACCCCGA-ACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTG 11617 || || || || ||||| ||| |||||||| | |||||| ||| |||| | Sbjct 136590 AAATTCAGAACCTGACACACT-AATGAAAGGAACATTTGCTTCACCAGCTGTAGCCTTAG 136648 Query 11618 CTAAAAGTGTTTTACCTGTACCTGGT 11643 |||| | ||||| |||||||| ||| Sbjct 136649 CTAACAACGTTTTGCCTGTACCAGGT 136674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635083053223440