Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq307 134 9e-27 seq467 107 1e-18 >seq307 Length=2169461 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||| | |||| ||||| |||| |||| |||||| |||||||| || || | Sbjct 1515900 TTCCTCCCCGAAGTCTCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAG 1515841 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | |||| || ||||| ||||| ||||| |||| ||||||||| ||| | | Sbjct 1515840 AGAGTGTCCTCCCATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAG 1515781 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||||| |||||| |||| | ||| || || | Sbjct 1515780 GTATTCCCTCTTTGTCCTGGATCTTAGCTTTGACATTCTCTATTGTGTCAGAAGCTTCGA 1515721 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 1515720 CTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1515672 Score = 132 bits (146), Expect = 3e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | || | ||||| |||| |||| |||||| ||||||||||| || | Sbjct 1509863 TTCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTG 1509804 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | |||| || ||||| || || ||||| |||| ||||||||||||| | | Sbjct 1509803 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1509744 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| |||||| ||||| |||||| || || || | Sbjct 1509743 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCTATCGTATCTGAAGCTTCGA 1509684 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGA 34990 | || | ||| ||||| || || || || ||||| ||||||||||||||||| | ||| Sbjct 1509683 CTTCCAGGGTGATGGTCTTCCCTGTAAGTGTCTTGACAAAGATCTGCATATTTGAAGA 1509626 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | || | ||||| |||| |||| |||||| ||||||||||| || | Sbjct 1510319 TTCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTG 1510260 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | |||| || ||||| || || ||||| |||| ||||||||||||| | | Sbjct 1510259 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1510200 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| |||||| || || | | || | ||| || || | Sbjct 1510199 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGA 1510140 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 1510139 CTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510091 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | || | ||||| |||| |||| |||||| ||||||||||| || | Sbjct 1510547 TTCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTG 1510488 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | |||| || ||||| || || ||||| |||| ||||||||||||| | | Sbjct 1510487 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1510428 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| |||||| || || | | || | ||| || || | Sbjct 1510427 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGA 1510368 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 1510367 CTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510319 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | || | ||||| |||| |||| |||||| ||||||||||| || | Sbjct 1514981 TTCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTG 1514922 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | |||| || ||||| || || ||||| |||| ||||||||||||| | | Sbjct 1514921 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1514862 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| |||||| || || | | || | ||| || || | Sbjct 1514861 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGA 1514802 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 1514801 CTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514753 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | || | ||||| |||| |||| |||||| ||||||||||| || | Sbjct 1510775 TTCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTG 1510716 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | |||| || ||||| || || ||||| |||| ||||||||||||| | | Sbjct 1510715 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1510656 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| |||||| |||| | || ||| || | Sbjct 1510655 GAATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCA 1510596 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || ||||| || |||||||||||||| ||||| ||||| Sbjct 1510595 CTTCTAGGGTGATAGTTTTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1510547 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | || | ||||| |||| |||| |||||| ||||||||||| || | Sbjct 1510091 TTCCTCCTCGAAGTCTTAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTG 1510032 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | |||| || ||||| || || ||||| |||| ||||||||||||| | | Sbjct 1510031 ACAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1509972 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| |||||| || || | | || | ||| || || | Sbjct 1509971 GGATTCCCTCTTTGTCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGA 1509912 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || ||||| |||||||| ||||| ||||| Sbjct 1509911 CTTCCAGAGTGATGGTTTTCCCTGTGAGTGTCTTCACGAAGATTTGCAT 1509863 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | || | ||||| |||| ||| |||||| ||||||||||| || | Sbjct 1515672 TTCCTCCTCGAAGTCTTAGAACCAGATGAAGGGTGGATTCTTTTTGAATGTTATAATCTG 1515613 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | |||| || ||||| ||||| ||||| |||| ||||||||||||| | | Sbjct 1515612 ACAGTGTCCTCCCATCTTCGAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAG 1515553 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| |||||| |||| | || ||| || | Sbjct 1515552 GAATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCA 1515493 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || ||||| || |||||||||||||| ||||| ||||| Sbjct 1515492 CTTCTAGGGTGATAGTTTTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1515444 Score = 104 bits (114), Expect = 2e-17 Identities = 164/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | |||| || | ||||| ||| |||||| ||||| ||||| || | Sbjct 1515216 TTCCTCCTCGAAGTCTCAGCACAAGGTGAAGTGTTGATTCTTTTTGAATATTATAATCTG 1515157 Query 34813 AAAGGCTT-------CGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 | || || | | |||| || ||||| || || ||||| |||| |||||||||| Sbjct 1515156 AGAGTGTTGAGTGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGG 1515097 Query 34866 TCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCG 34925 ||| | || | ||||| ||||| ||||| || || | | || | ||| Sbjct 1515096 TCTGGAGGGATTCCCTCTTTGTCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAA 1515037 Query 34926 GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || | ||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 1515036 GCTTCGACTTCCAGGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514981 >seq467 Length=2555529 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || || || ||||| | || |||| ||||| ||||| || || || Sbjct 1364194 TTCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCCAGTTGTTTACCAGCGAA 1364253 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| || ||||| ||| | || | || || ||||| ||| || || ||| Sbjct 1364254 GATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTCACGTT 1364313 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| |||||||| || | |||||||||||||| || ||||||||||| Sbjct 1364314 TTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTTTTTCCAGTAAGAGTCTTCAC 1364373 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 1364374 AAAAATTTGCAT 1364385 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || || ||||| || ||||| | ||| |||| |||| || || || ||||| Sbjct 1365695 TTCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAA 1365754 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| || ||||||||| | || | || |||||||| || || ||| ||| Sbjct 1365755 GATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACGTT 1365814 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || |||||||| || | ||||| |||||||| || || || || || Sbjct 1365815 TTCAATGGTATCGGACGCCTCAACTTCCAATGTTATTGTTTTTCCAGTAAGTGTTTTTAC 1365874 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 1365875 GAAGATCTGCAT 1365886 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||||||||| || | | ||| |||| |||| ||||| || ||||| Sbjct 1365240 TCTTTCTGAATGTTATAGTCAGATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCAAAA 1365299 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | || |||||| | || | || || ||||| ||| || || || || Sbjct 1365300 ATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTTAGCCTTTAC--AT 1365357 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| |||||||| || | |||||| |||||||| || || || |||| Sbjct 1365358 TCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCA 1365417 Query 34969 CAAAGATCTGCAT 34981 | || |||||||| Sbjct 1365418 CGAATATCTGCAT 1365430 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| || || || || ||||| ||||| | ||| |||| || | || Sbjct 1366367 GTGAAGTGTAGATTCCTTTTGTATATTGTAGTCAGAAAGTGTGCGTCCATCTTCTAATTG 1366426 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| || || || || | || ||||| ||| | || | ||||| || || || || Sbjct 1366427 TTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGGATGCCCTCTTTATCCTGGATTTT 1366486 Query 34898 CTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCC 34955 ||| || || || || | || |||||||| |||| |||||||||||||||| Sbjct 1366487 TGCTTTAAC--ATTCTCGATGGTGTCTGATGCCTCAACCTCGAGGGTTATGGTTTTTCCC 1366544 Query 34956 GTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||||| || || |||||||| Sbjct 1366545 GTCAATGTCTTTACGAAAATCTGCAT 1366570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324608808746448