Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq305 152 6e-32 seq105 152 6e-32 >seq305 Length=1407860 Score = 152 bits (168), Expect = 6e-32 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 19239 ATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA 19298 ||| || ||||| ||||||||||||||| | |||||| ||||| | || || || || Sbjct 686666 ATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATA 686725 Query 19299 AAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATT 19358 ||||| | ||| ||||||||||||||||| || ||||| ||| || | ||||||||| Sbjct 686726 GAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATT 686785 Query 19359 AACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC 19418 || ||||||||| ||||||||||||||||||||||| || ||||| || ||| Sbjct 686786 GACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATGAGATATGAAATGCTTCTCACT 686845 Query 19419 TGAGGTTAATGTATTCCAATCA 19440 || || || || ||||||| Sbjct 686846 AGAAGTCAAACGATCCCAATCA 686867 Score = 129 bits (142), Expect = 7e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 ||||| || | || ||||| || || ||||||| |||||| ||| | | |||| Sbjct 686037 CCTAACTCCACGAGCAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAA 686096 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| ||||| | || |||||||| ||||||||| | |||||||||||| || | || Sbjct 686097 TTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACA 686156 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 || ||| ||||| || ||||| || | || | || || |||||||||| Sbjct 686157 GCATCTTTAATAATTGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAAC 686216 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCT 18985 || |||||||||||||||||||||| ||||| Sbjct 686217 ATTAAACATGCAAAATCACAATGTAATCCCT 686247 Score = 104 bits (114), Expect = 3e-17 Identities = 107/136 (79%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 ||| ||| ||| ||| | ||| ||||| || || ||||| || ||||| || |||||||| Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTT- 19558 |||||| | ||| |||||| | |||| |||||||| | |||||||||| | ||||| Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTTTC 687065 Query 19559 CTTTAAGAATAGGTTC 19574 |||||| ||| ||||| Sbjct 687066 CTTTAATAAT-GGTTC 687080 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||| || | |||||| || || | || ||||| |||||||| || | Sbjct 686325 CCTCATCCCTAGAAATAAGTTCATTGCTGAACGTAAGTCCTGGCATAAGTCCTCTCTTCT 686384 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||||| || | |||||| ||| ||||| |||||||||||||| ||||| | Sbjct 686385 TTAACCAGAAAATGGCAGCAAAGCTACCACTGAAGAAAATACCTTCTACTGCGGCAAATG 686444 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | |||| | ||| || |||| | || | ||||| |||| |||||||| || Sbjct 686445 CGACTACACGTTCAGGGAAAGTAGCGGTTTCATGGTTTATCCAATTCAATGCCCAATTAG 686504 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | || ||| ||||| || | | || || | |||||||| Sbjct 686505 CTTTTTTTGCAACACAGGGTAAATTTTCAATGGCATTAAATA 686546 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| |||||| ||||| ||||| ||||| |||| ||||| || || ||||| || || Sbjct 685848 CATGACTCCCCACTTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTC 685907 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 || || ||| |||||||||||||||||||||| Sbjct 685908 CAAAGAAATATGCTCCATAAAATCAAATGGATTTT 685942 >seq105 Length=615523 Score = 152 bits (168), Expect = 6e-32 Identities = 178/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 47231 TTGAATAGATCCTCCgttttctataattttgtttttta-attcatttgacc-aaagtttt 47288 |||||| || || |||| ||||||||| ||||| | ||| || | || |||| | | Sbjct 157522 TTGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATT--TTCGTCCCAAAGATCT 157465 Query 47289 cgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACT 47348 | ||||||||| | ||| | ||||||||| || || ||||||||||| || | ||| Sbjct 157464 CTTTCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACT 157405 Query 47349 CTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGA 47408 | || |||| || ||||| || || ||||||||||||||||||||||| |||||||| Sbjct 157404 CGTCGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGC 157345 Query 47409 GCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTT 47465 || || |||||||| ||||| | || | || || |||||| ||||| | |||| Sbjct 157344 GCGGTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTT 157288 Score = 120 bits (132), Expect = 3e-22 Identities = 216/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 ||| |||| |||| || || | ||| || | ||||| |||||||||||||||| |||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 | || | | | || || |||||||| ||||| ||||| | |||||| || || || || Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 48393 TAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTT 48452 || || || | ||| || || | ||||| |||| |||| || || | || | Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACCAGCTATTGGTGTA 155990 Query 48453 CCACTAGCTCTTAT---AT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 || ||||||| ||| || ||| ||| | || |||||||| || ||| || Sbjct 155989 CCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTAAT 155934 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 | ||||||| || | ||||||||||||||||| || ||||| || |||| | Sbjct 155933 CAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAAAG 155874 Query 48569 TAGAAAACAACT 48580 || |||||||| Sbjct 155873 AAGGAAACAACT 155862 Score = 114 bits (126), Expect = 1e-20 Identities = 183/260 (70%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 48579 CTAGACATTTGCGGATGACA-AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637 || ||||||||| || | || ||| | || | ||| ||||| ||||||||||| |||| Sbjct 155795 CTGGACATTTGCTGA-GTCACAGTACATGCAGAAAACAATGTAGGAGATGCATGTGTAAA 155737 Query 48638 CCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTAT 48697 || ||||| || || || || ||||| || | || ||||| ||| || Sbjct 155736 ATATCGTTCTGACAAAAAATTGTAAGTTTCTATGGCTTTTTCAATATCTTCACCATGAAT 155677 Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757 | | | | || | ||| ||||||| ||| || |||||||||| ||| || |||||| Sbjct 155676 AGCAACTGCGACTCTCATCAACATATGTTGTGGCCTTTCAACAACTTTTCCATGTATTTT 155617 Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 | ||||| | |||| | |||||||| |||||||| ||||| ||| || |||| Sbjct 155616 TAGCAGATAGCTTCTTTCAAGCGTTTTAAAGCCAAAATAATTGTAACTAAAATCTCTATC 155557 Query 48818 ATTAATAATTGATGAATTTA 48837 || ||| |||| |||||||| Sbjct 155556 ATAAATTATTGCTGAATTTA 155537 Score = 102 bits (112), Expect = 9e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 47051 CCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATT 47110 ||||||||| || ||||| ||||||||| | |||| | ||||||| ||| Sbjct 157786 CCATCCATAAAAGTGCATTGAAGTTAATTTTTCTGTCGTTGGTTTAGCCATATGAACATT 157727 Query 47111 AAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCT 47170 | ||||| |||||||||||| ||||| | ||| |||||||| | ||||| ||| | Sbjct 157726 TAAGGATTGTGACTGATCAATAAAGGCACCACGATCCGCTGCCATTTTTAAAACGACCTT 157667 Query 47171 TTGTGGTATCTCCCATACTGTTTTATAAA 47199 ||||| ||| ||||| ||||||||||||| Sbjct 157666 TTGTGATATTTCCCAAACTGTTTTATAAA 157638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562064772828240