Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq305 152 6e-32
seq105 152 6e-32
>seq305
Length=1407860
Score = 152 bits (168), Expect = 6e-32
Identities = 155/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 19239 ATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA 19298
||| || ||||| ||||||||||||||| | |||||| ||||| | || || || ||
Sbjct 686666 ATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAGCCATA 686725
Query 19299 AAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATT 19358
||||| | ||| ||||||||||||||||| || ||||| ||| || | |||||||||
Sbjct 686726 GAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTTTCATT 686785
Query 19359 AACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC 19418
|| ||||||||| ||||||||||||||||||||||| || ||||| || |||
Sbjct 686786 GACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATGAGATATGAAATGCTTCTCACT 686845
Query 19419 TGAGGTTAATGTATTCCAATCA 19440
|| || || || |||||||
Sbjct 686846 AGAAGTCAAACGATCCCAATCA 686867
Score = 129 bits (142), Expect = 7e-25
Identities = 155/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834
||||| || | || ||||| || || ||||||| |||||| ||| | | ||||
Sbjct 686037 CCTAACTCCACGAGCAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAA 686096
Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894
||||| ||||| | || |||||||| ||||||||| | |||||||||||| || | ||
Sbjct 686097 TTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACA 686156
Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954
|| ||| ||||| || ||||| || | || | || || ||||||||||
Sbjct 686157 GCATCTTTAATAATTGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAAC 686216
Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCT 18985
|| |||||||||||||||||||||| |||||
Sbjct 686217 ATTAAACATGCAAAATCACAATGTAATCCCT 686247
Score = 104 bits (114), Expect = 3e-17
Identities = 107/136 (79%), Gaps = 3/136 (2%)
Strand=Plus/Plus
Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499
||| ||| ||| ||| | ||| ||||| || || ||||| || ||||| || ||||||||
Sbjct 686947 ATTTATACCTT-AGAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005
Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTT- 19558
|||||| | ||| |||||| | |||| |||||||| | |||||||||| | |||||
Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTTTC 687065
Query 19559 CTTTAAGAATAGGTTC 19574
|||||| ||| |||||
Sbjct 687066 CTTTAATAAT-GGTTC 687080
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| || ||| || | |||||| || || | || ||||| |||||||| || |
Sbjct 686325 CCTCATCCCTAGAAATAAGTTCATTGCTGAACGTAAGTCCTGGCATAAGTCCTCTCTTCT 686384
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
|||||||||| || | |||||| ||| ||||| |||||||||||||| ||||| |
Sbjct 686385 TTAACCAGAAAATGGCAGCAAAGCTACCACTGAAGAAAATACCTTCTACTGCGGCAAATG 686444
Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162
| |||| | ||| || |||| | || | ||||| |||| |||||||| ||
Sbjct 686445 CGACTACACGTTCAGGGAAAGTAGCGGTTTCATGGTTTATCCAATTCAATGCCCAATTAG 686504
Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204
| || ||| ||||| || | | || || | ||||||||
Sbjct 686505 CTTTTTTTGCAACACAGGGTAAATTTTCAATGGCATTAAATA 686546
Score = 82.4 bits (90), Expect = 9e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716
||| |||||| ||||| ||||| ||||| |||| ||||| || || ||||| || ||
Sbjct 685848 CATGACTCCCCACTTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTC 685907
Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751
|| || ||| ||||||||||||||||||||||
Sbjct 685908 CAAAGAAATATGCTCCATAAAATCAAATGGATTTT 685942
>seq105
Length=615523
Score = 152 bits (168), Expect = 6e-32
Identities = 178/237 (75%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 47231 TTGAATAGATCCTCCgttttctataattttgtttttta-attcatttgacc-aaagtttt 47288
|||||| || || |||| ||||||||| ||||| | ||| || | || |||| | |
Sbjct 157522 TTGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATT--TTCGTCCCAAAGATCT 157465
Query 47289 cgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACT 47348
| ||||||||| | ||| | ||||||||| || || ||||||||||| || | |||
Sbjct 157464 CTTTCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACT 157405
Query 47349 CTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGA 47408
| || |||| || ||||| || || ||||||||||||||||||||||| ||||||||
Sbjct 157404 CGTCGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGC 157345
Query 47409 GCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTT 47465
|| || |||||||| ||||| | || | || || |||||| ||||| | ||||
Sbjct 157344 GCGGTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTT 157288
Score = 120 bits (132), Expect = 3e-22
Identities = 216/312 (69%), Gaps = 8/312 (3%)
Strand=Plus/Minus
Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332
||| |||| |||| || || | ||| || | ||||| |||||||||||||||| ||||
Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110
Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392
| || | | | || || |||||||| ||||| ||||| | |||||| || || || ||
Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050
Query 48393 TAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTT 48452
|| || || | ||| || || | ||||| |||| |||| || || | || |
Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACCAGCTATTGGTGTA 155990
Query 48453 CCACTAGCTCTTAT---AT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508
|| ||||||| ||| || ||| ||| | || |||||||| || ||| ||
Sbjct 155989 CCTCTAGCTCGTATGCAATGTAC--ATT--TAGTCCAATACCACCAGCTGATTTGCTAAT 155934
Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568
| ||||||| || | ||||||||||||||||| || ||||| || |||| |
Sbjct 155933 CAATGCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAAAG 155874
Query 48569 TAGAAAACAACT 48580
|| ||||||||
Sbjct 155873 AAGGAAACAACT 155862
Score = 114 bits (126), Expect = 1e-20
Identities = 183/260 (70%), Gaps = 2/260 (1%)
Strand=Plus/Minus
Query 48579 CTAGACATTTGCGGATGACA-AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637
|| ||||||||| || | || ||| | || | ||| ||||| ||||||||||| ||||
Sbjct 155795 CTGGACATTTGCTGA-GTCACAGTACATGCAGAAAACAATGTAGGAGATGCATGTGTAAA 155737
Query 48638 CCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTAT 48697
|| ||||| || || || || ||||| || | || ||||| ||| ||
Sbjct 155736 ATATCGTTCTGACAAAAAATTGTAAGTTTCTATGGCTTTTTCAATATCTTCACCATGAAT 155677
Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757
| | | | || | ||| ||||||| ||| || |||||||||| ||| || ||||||
Sbjct 155676 AGCAACTGCGACTCTCATCAACATATGTTGTGGCCTTTCAACAACTTTTCCATGTATTTT 155617
Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817
| ||||| | |||| | |||||||| |||||||| ||||| ||| || ||||
Sbjct 155616 TAGCAGATAGCTTCTTTCAAGCGTTTTAAAGCCAAAATAATTGTAACTAAAATCTCTATC 155557
Query 48818 ATTAATAATTGATGAATTTA 48837
|| ||| |||| ||||||||
Sbjct 155556 ATAAATTATTGCTGAATTTA 155537
Score = 102 bits (112), Expect = 9e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 47051 CCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATT 47110
||||||||| || ||||| ||||||||| | |||| | ||||||| |||
Sbjct 157786 CCATCCATAAAAGTGCATTGAAGTTAATTTTTCTGTCGTTGGTTTAGCCATATGAACATT 157727
Query 47111 AAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCT 47170
| ||||| |||||||||||| ||||| | ||| |||||||| | ||||| ||| |
Sbjct 157726 TAAGGATTGTGACTGATCAATAAAGGCACCACGATCCGCTGCCATTTTTAAAACGACCTT 157667
Query 47171 TTGTGGTATCTCCCATACTGTTTTATAAA 47199
||||| ||| ||||| |||||||||||||
Sbjct 157666 TTGTGATATTTCCCAAACTGTTTTATAAA 157638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562064772828240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |