Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq305 105 8e-18
>seq305
Length=1407860
Score = 105 bits (116), Expect = 8e-18
Identities = 147/200 (74%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 37002 AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061
|| || || || || |||||||| || |||| |||||| |||| | | || || || ||
Sbjct 686049 AGCAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATC 686108
Query 37062 AGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121
| || || || | ||||||| | |||| || ||| ||| ||||||||||||| |
Sbjct 686109 ATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAA-T 686167
Query 37122 ATATTAACAATAACTTCTTCAGTTGGGGGATATTTTA-AATA--TTTAAACAATAAACAT 37178
| ||| || ||||| |||| | || | || || |||| |||||||| |||||||
Sbjct 686168 A-ATTGAC-GTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACAT 686225
Query 37179 GCAAAATCACAATGTAAACC 37198
||||||||||||||||| ||
Sbjct 686226 GCAAAATCACAATGTAATCC 686245
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/139 (75%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 36827 TTAAAAATCTTCATCTAAC-GTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTT 36885
|||||| || ||| |||| ||||| || |||| | || | ||| |||||| |
Sbjct 685803 TTAAAAGTCGGCAT-TAACTGTAAAATTACTTTCAATTCTATCTTGCATGACTCCCCACT 685861
Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945
|||| |||||||||||| | | || ||||| ||||| || ||||| | || |||| |
Sbjct 685862 TTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGCT 685921
Query 36946 CCATAAAATCAAATGGATT 36964
|||||||||||||||||||
Sbjct 685922 CCATAAAATCAAATGGATT 685940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592270406786640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |