Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq305 105 8e-18 >seq305 Length=1407860 Score = 105 bits (116), Expect = 8e-18 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 37002 AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 || || || || || |||||||| || |||| |||||| |||| | | || || || || Sbjct 686049 AGCAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATC 686108 Query 37062 AGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 | || || || | ||||||| | |||| || ||| ||| ||||||||||||| | Sbjct 686109 ATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAA-T 686167 Query 37122 ATATTAACAATAACTTCTTCAGTTGGGGGATATTTTA-AATA--TTTAAACAATAAACAT 37178 | ||| || ||||| |||| | || | || || |||| |||||||| ||||||| Sbjct 686168 A-ATTGAC-GTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACAT 686225 Query 37179 GCAAAATCACAATGTAAACC 37198 ||||||||||||||||| || Sbjct 686226 GCAAAATCACAATGTAATCC 686245 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 36827 TTAAAAATCTTCATCTAAC-GTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTT 36885 |||||| || ||| |||| ||||| || |||| | || | ||| |||||| | Sbjct 685803 TTAAAAGTCGGCAT-TAACTGTAAAATTACTTTCAATTCTATCTTGCATGACTCCCCACT 685861 Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 |||| |||||||||||| | | || ||||| ||||| || ||||| | || |||| | Sbjct 685862 TTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGCT 685921 Query 36946 CCATAAAATCAAATGGATT 36964 ||||||||||||||||||| Sbjct 685922 CCATAAAATCAAATGGATT 685940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592270406786640