Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq467 107 1e-18 seq321 102 6e-17 >seq467 Length=2555529 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || ||||| || || ||||| ||||||||||||||||| Sbjct 1364159 CCTCCCCTGAGTCGAAGTACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAA 1364218 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| || ||||| || || || | || ||| ||||| | ||| Sbjct 1364219 AGTGTACGACCATCTTCCAGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGA 1364278 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| ||| ||| || || | | || || |||||||| || Sbjct 1364279 ATGCCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATAGTGTCAGACGCCTCAACT 1364338 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||| || | ||| || |||||||| ||||| Sbjct 1364339 TCCAGAGTTATGGTTTTTCCAGTAAGAGTCTTCACAAAAATTTGCAT 1364385 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| |||||||| ||||| || | || | || || || || ||||| || || Sbjct 1366380 TCCTTTTGTATATTGTAGTCAGAAAGTGTGCGTCCATCTTCTAATTGTTTACCAGCGAAG 1366439 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||| ||||| | || | |||||| || || || ||| ||| ||| Sbjct 1366440 ATCAATCTCTGCTGATCTGGTGGGATGCCCTCTTTATCCTGGATTTTTGCTTTAACATTC 1366499 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||||| ||||| | || || |||||||||||||| || ||||| Sbjct 1366500 TCGATGGTGTCTGATGCCTCAACCTCGAGGGTTATGGTTTTTCCCGTCAATGTCTTTACG 1366559 Query 48756 AAAATCTGCATCGT 48769 ||||||||||| || Sbjct 1366560 AAAATCTGCATGGT 1366573 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||||||||| |||| | || | || || || || ||||| ||||| Sbjct 1365924 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1365983 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | |||| || || ||||| ||| || ||| ||| Sbjct 1365984 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTGGCTTTAACATTT 1366043 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| || ||||| || | || || || ||||| ||||| || ||||| Sbjct 1366044 TCAATTGTATCTGATGCTTCCACTTCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTACG 1366103 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 1366104 AAGATCTGCAT 1366114 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| ||||| |||||||| | || | || || ||||||||||| || || Sbjct 1364422 CTCTTTCTGAATGTTGTAGTCAGATAGTGTGCGCCCATCTTCTAACTGCTTACCAGCGAA 1364481 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || || || || | ||| | ||| || || || || ||| | ||| | Sbjct 1364482 GATCAATCTTTGCTGGTCTGGGGGGATGCCTTCTTTATC-CTGGATTTTAGCCTTAACGT 1364540 Query 48695 AC-CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | || ||||| ||||| || |||| ||||| || ||||| || | |||||| | Sbjct 1364541 TCTCAATAGTGTCTGATGCCTCAACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTTTTCA 1364600 Query 48754 CAAAAATCTGCAT 48766 |||| |||||||| Sbjct 1364601 CAAAGATCTGCAT 1364613 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||||||||| |||| | || | || || || || ||||| ||||| Sbjct 1364651 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1364710 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | |||| || || ||||| ||| || |||||| Sbjct 1364711 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTAGCCTTTACATTC 1364770 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||| || |||| || || |||||||| || | ||||| || Sbjct 1364771 TCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACG 1364830 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 1364831 AATATCTGCAT 1364841 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| ||||| |||||||| || | || | || ||||| ||||| || ||||| Sbjct 1365468 TCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAAG 1365527 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || ||| || || | || | || |||||||| || || ||| ||| Sbjct 1365528 ATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACATTT 1365587 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||||||||| || |||| || || |||||||| || | ||||| || Sbjct 1365588 TCAATGGTGTCTGACGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACG 1365647 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 1365648 AATATCTGCAT 1365658 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||||||||| ||||||| | || | || ||||| || || || || || Sbjct 1366152 TCCTTTTGAATATTGTAGTCAGATAATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAG 1366211 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| ||||| || | |||| ||||| || || ||| || ||| ||| Sbjct 1366212 ATCAGTCTTTGTTGGTCTGGAGGAATACCCTCTTTATCCTGAATTTTAGCTTTAACATTT 1366271 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| || || || || | || || || ||||| ||||| || ||||| Sbjct 1366272 TCAATAGTGTCTGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTTACG 1366331 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 1366332 AAGATCTGCAT 1366342 >seq321 Length=1097274 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| || ||||| |||||||| || | || | || || || || || || || || | Sbjct 785271 CTTTCTGGATATTATAATCAGAGAGGGTACGTCCATCTTCTAATTGTTTTCCAGCGAAAA 785330 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | || ||||||||||| | |||| || || || || ||| || ||||||| Sbjct 785331 TTAGACGCTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTAGCTTTTACATTTT 785390 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || ||||| || ||||| | ||| || ||||| |||||||||||||| || | Sbjct 785391 CGATGGTATCAGACGCTTCTACCTCGAGCGTGATAGTTTTGCCCGTCAAAGTTTTCACGA 785450 Query 48757 AAATCTGCATCGTG 48770 | |||||||||||| Sbjct 785451 ATATCTGCATCGTG 785464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380908508985918