Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq105 104 1e-17 >seq105 Length=615523 Score = 104 bits (114), Expect = 1e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 ||||||||| |||||||||| || | | | | ||| |||| | ||||| | | |||| Sbjct 157423 AAATTCTCCTGACAAAACTCGTCGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTC 157364 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 ||||||||| || ||||| | |||||||||||||||||| ||||| || | ||||| Sbjct 157363 ATTATTTCCCAAAATTTGCGCGGTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATT 157304 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTA 25166 ||| | || | ||| |||| | || ||||| Sbjct 157303 TCTGACTCCGTGTTTTGCAATTTTTTCTTTTA 157272 Score = 82.4 bits (90), Expect = 4e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 || |||||| | ||| |||| || |||||| | |||| | |||||| | ||| || Sbjct 156338 ATGTGGACACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGG 156279 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCC 25995 |||||||| ||||||||||| ||||| ||||| |||||||||| || Sbjct 156278 AATCCACAAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACC 156231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253020676125950