Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq140 104 7e-17
seq152 100 8e-16
seq540 96.9 1e-14
seq66 91.5 4e-13
>seq140
Length=2205453
Score = 104 bits (114), Expect = 7e-17
Identities = 188/272 (69%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| ||| || |||||||||||||| || |||||| | || |||||||| |||
Sbjct 614199 TCCATAGCCTTTATCAAACGACGCTGAATGTATCCAGTTTCTGCAGTCTTTACAGCAGTA 614140
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694
|| || ||||| ||||||| ||||| || ||||| | | || |||| | ||
Sbjct 614139 TCGATAAGACCTTCACGACCTCCCATGGCGTGGAAATAAAATTCAGACGGTGTCAAACCG 614080
Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751
||| | | ||| |||| ||||| || | | ||| || || |||| || |||| |
Sbjct 614079 GCAAGATACGAGTTCTCGACGAATCCTCTAGACTCAGGACCGTAATCATC---CTTGATG 614023
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| ||||||| || || || | || | || || || || || ||||||||||||
Sbjct 614022 AAATGTGGCAACGTTCTTTTACGGAAACCAAAAGGAATTCGTTTACCTTCAACGTTCTGC 613963
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
|| || | || | ||| | || ||||||||
Sbjct 613962 TGACCTACACAAGCAATAACTTGAGAAATATT 613931
>seq152
Length=1708397
Score = 100 bits (110), Expect = 8e-16
Identities = 147/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 60142 TGTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAAT 60199
|||||||||||| | ||| ||||| || ||||| || ||| | || ||||||
Sbjct 1101570 TGTGAAAATATAACGA--GGACTCGCTGCATCTTTGCCTCCAGCAAGCCTCGTACCAAAT 1101513
Query 60200 TGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259
|| ||| ||| |||| || ||||||||| ||| ||||| ||||| || |||||| |
Sbjct 1101512 TGACCGATTGATTGGAGTAAATTAATGTTATTACTTCCTACAAAATTCTGCGCGAGATTA 1101453
Query 60260 ACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319
| ||||| | | | | |||||||||||||||| | |||||||| | |||| |
Sbjct 1101452 ATAATAGTTGACATAAGAGACGTTTCACCGTGATGATATGCGGAATGTTCAGCAACAGAA 1101393
Query 60320 CCACTGAATTGTGCGACTTTAATTTC 60345
||| ||||| || ||||| | |||
Sbjct 1101392 CCAGCTAATTGAGCAACTTTGACTTC 1101367
>seq540
Length=246768
Score = 96.9 bits (106), Expect = 1e-14
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080
||||| | ||||| ||||| ||||| ||||| || | | || |||| || | ||
Sbjct 136474 CTTTTCCTTCCAACGGCATCGATTTCATCAATAAATAATATGCATGGAGCATGCTTTCGT 136533
Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140
|| |||||||| | || | || | || | |||| ||| ||| ||||||| | ||||
Sbjct 136534 GCCATTGCAAACATGTCACGAACTCTCGAAGGACCAACACCGACAAACATTTCCAGAAAT 136593
Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200
|||||| | || || |||||| | ||||||||||| || ||| ||| | || |
Sbjct 136594 TCAGAACCTGACACACTAATGAAAGGAACATTTGCTTCACCAGCTGTAGCCTTAGCTAAC 136653
Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226
| || || ||||| |||||||||||
Sbjct 136654 AACGTTTTGCCTGTACCAGGTGGTCC 136679
>seq66
Length=1746113
Score = 91.5 bits (100), Expect = 4e-13
Identities = 132/181 (73%), Gaps = 4/181 (2%)
Strand=Plus/Minus
Query 252505 GGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATA 252564
|| ||| |||| |||| ||| ||||||| | | || | ||||||||| || |
Sbjct 430919 GGATAATATAGTACATGTGCCAAAGTATCCATTCGAACATGAAAATTTGTAATGTATACT 430860
Query 252565 CCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCC 252624
|| | || || || ||||||||||| || ||||| ||||| ||| |||||| | ||
Sbjct 430859 CCCATAGCTTGTTTACCCATAGCACTTTGATAAGTGTTTCTTGGACTCTGATTATGATCA 430800
Query 252625 GGGAAAGGAATGCATGATGCTACA-ACACCGAAGAT-AGTGCTTGGGTGAATTTCACAGT 252682
|| || |||||| |||||| ||| || || || || | |||| |||||||||||||| |
Sbjct 430799 GGAAATGGAATGATTGATGC-ACATACTCCTAAAATCATTGCT-GGGTGAATTTCACAAT 430742
Query 252683 G 252683
|
Sbjct 430741 G 430741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471699437883642
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |