Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq140 104 7e-17 seq152 100 8e-16 seq540 96.9 1e-14 seq66 91.5 4e-13 >seq140 Length=2205453 Score = 104 bits (114), Expect = 7e-17 Identities = 188/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || |||||||||||||| || |||||| | || |||||||| ||| Sbjct 614199 TCCATAGCCTTTATCAAACGACGCTGAATGTATCCAGTTTCTGCAGTCTTTACAGCAGTA 614140 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| ||||| || ||||| | | || |||| | || Sbjct 614139 TCGATAAGACCTTCACGACCTCCCATGGCGTGGAAATAAAATTCAGACGGTGTCAAACCG 614080 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | ||| |||| ||||| || | | ||| || || |||| || |||| | Sbjct 614079 GCAAGATACGAGTTCTCGACGAATCCTCTAGACTCAGGACCGTAATCATC---CTTGATG 614023 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| || || || | || | || || || || || |||||||||||| Sbjct 614022 AAATGTGGCAACGTTCTTTTACGGAAACCAAAAGGAATTCGTTTACCTTCAACGTTCTGC 613963 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | ||| | || |||||||| Sbjct 613962 TGACCTACACAAGCAATAACTTGAGAAATATT 613931 >seq152 Length=1708397 Score = 100 bits (110), Expect = 8e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 60142 TGTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAAT 60199 |||||||||||| | ||| ||||| || ||||| || ||| | || |||||| Sbjct 1101570 TGTGAAAATATAACGA--GGACTCGCTGCATCTTTGCCTCCAGCAAGCCTCGTACCAAAT 1101513 Query 60200 TGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259 || ||| ||| |||| || ||||||||| ||| ||||| ||||| || |||||| | Sbjct 1101512 TGACCGATTGATTGGAGTAAATTAATGTTATTACTTCCTACAAAATTCTGCGCGAGATTA 1101453 Query 60260 ACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 | ||||| | | | | |||||||||||||||| | |||||||| | |||| | Sbjct 1101452 ATAATAGTTGACATAAGAGACGTTTCACCGTGATGATATGCGGAATGTTCAGCAACAGAA 1101393 Query 60320 CCACTGAATTGTGCGACTTTAATTTC 60345 ||| ||||| || ||||| | ||| Sbjct 1101392 CCAGCTAATTGAGCAACTTTGACTTC 1101367 >seq540 Length=246768 Score = 96.9 bits (106), Expect = 1e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 ||||| | ||||| ||||| ||||| ||||| || | | || |||| || | || Sbjct 136474 CTTTTCCTTCCAACGGCATCGATTTCATCAATAAATAATATGCATGGAGCATGCTTTCGT 136533 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || |||||||| | || | || | || | |||| ||| ||| ||||||| | |||| Sbjct 136534 GCCATTGCAAACATGTCACGAACTCTCGAAGGACCAACACCGACAAACATTTCCAGAAAT 136593 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 |||||| | || || |||||| | ||||||||||| || ||| ||| | || | Sbjct 136594 TCAGAACCTGACACACTAATGAAAGGAACATTTGCTTCACCAGCTGTAGCCTTAGCTAAC 136653 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | || || ||||| ||||||||||| Sbjct 136654 AACGTTTTGCCTGTACCAGGTGGTCC 136679 >seq66 Length=1746113 Score = 91.5 bits (100), Expect = 4e-13 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 252505 GGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATA 252564 || ||| |||| |||| ||| ||||||| | | || | ||||||||| || | Sbjct 430919 GGATAATATAGTACATGTGCCAAAGTATCCATTCGAACATGAAAATTTGTAATGTATACT 430860 Query 252565 CCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCC 252624 || | || || || ||||||||||| || ||||| ||||| ||| |||||| | || Sbjct 430859 CCCATAGCTTGTTTACCCATAGCACTTTGATAAGTGTTTCTTGGACTCTGATTATGATCA 430800 Query 252625 GGGAAAGGAATGCATGATGCTACA-ACACCGAAGAT-AGTGCTTGGGTGAATTTCACAGT 252682 || || |||||| |||||| ||| || || || || | |||| |||||||||||||| | Sbjct 430799 GGAAATGGAATGATTGATGC-ACATACTCCTAAAATCATTGCT-GGGTGAATTTCACAAT 430742 Query 252683 G 252683 | Sbjct 430741 G 430741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471699437883642