Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq35 298 5e-76 seq307 104 2e-17 seq467 82.4 6e-11 >seq35 Length=4111758 Score = 298 bits (330), Expect = 5e-76 Identities = 302/393 (77%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314 || || || ||||| |||||||| ||||| ||||| | ||| || ||| || || Sbjct 1055167 CCATGGTAGCCGCAGGCTTTGCATCCCTGCGAGATAGTCCCCTTCTTCGCGCTGACCATC 1055226 Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 ||||| || || ||||| || || ||||||| | ||| | || || ||||| ||||| Sbjct 1055227 AGCTCCGTTTCAGGGTTATCGCAGGCCGGACAGAGAACATATTTTCGAATGAATCCATCG 1055286 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 || || || || | ||| || |||||| || ||||| |||||||||| ||| |||||| Sbjct 1055287 AGGAGATCTTGCAGCTTGGTGGCGTCGTGCGAACCGTTCACGATGAATCTTTCATTTTTG 1055346 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 |||||| ||| ||||| || || |||||||| ||||||||||| ||||||||| |||| Sbjct 1055347 AAATCGAACTGGGTTTGAGCTCCGAGCTCGCATCCGAAGTACTTGGTCGGGTAAGTGGCA 1055406 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || | ||||| ||||| || | ||| |||||| |||||||| ||||| ||||||||| Sbjct 1055407 GGTCTTCCAATGGCCTTCGCAACGTCGACCATGTTTACGATGACGGTCTTAATGCCGTTG 1055466 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 ||||| || ||||||||||| ||| ||||||||||| ||||| || ||||| || Sbjct 1055467 CCCTTGCCCTCGACCTTGGCTTGGATCCGCGGCATTTTATAGCGATAAAACGCATCGCTG 1055526 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 || ||||||||||||| || ||||||| ||| Sbjct 1055527 ACGGTGCGGTTAACGTTGACGCTCCCCATGGTG 1055559 >seq307 Length=2169461 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| |||||||| || | || || |||||||| ||| | ||| || ||| | Sbjct 1514524 AATGCAAATCTTTGTCAAGACACTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCTTC 1514583 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | ||||| | | | || ||| ||||| || |||||||| | || |||| Sbjct 1514584 A-GATACGATAGAGAATGTCAAAGCTAAGATCCAAGATAAAGAAGGAATTCCTCCTGATC 1514642 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | ||| || | || | ||| || || |||||||| |||| || ||| | | ||||| | Sbjct 1514643 AGCAACGATTAATCTTTGCTGGAAAGCAGCTGGAAGATGGAAGGACACTTTCAGATTATA 1514702 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 | |||||||||||||| || | ||| | ||| | ||||| ||||| |||| Sbjct 1514703 ATATTCAAAAAGAATCAACACTTCACCTTGTGCTGAGACTTCGAGGAGGAA 1514753 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--C 110328 ||||||||| || ||||| ||| | || || |||||||| ||| | ||| || ||| | Sbjct 1510090 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1510149 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || | | | ||||| |||||| |||||||| || | || || Sbjct 1510150 TGAC---ACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGA 1510206 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || ||| || | || | ||| || || ||||| || |||| || ||| || | ||||| Sbjct 1510207 CCAGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCAGATTA 1510266 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| || | || |||| ||||||| ||||| |||| Sbjct 1510267 TAACATTCAAAAAGAATCCACACTTCATCTGGTTCTAAGACTTCGAGGAGGAA 1510319 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--C 110328 ||||||||| || ||||| ||| | || || |||||||| ||| | ||| || ||| | Sbjct 1510318 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1510377 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || | | | ||||| |||||| |||||||| || | || || Sbjct 1510378 TGAC---ACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGA 1510434 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || ||| || | || | ||| || || ||||| || |||| || ||| || | ||||| Sbjct 1510435 CCAGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCAGATTA 1510494 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| || | || |||| ||||||| ||||| |||| Sbjct 1510495 TAACATTCAAAAAGAATCCACACTTCATCTGGTTCTAAGACTTCGAGGAGGAA 1510547 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--C 110328 ||||||||| || ||||| ||| | || || |||||||| ||| | ||| || ||| | Sbjct 1514752 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1514811 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || | | | ||||| |||||| |||||||| || | || || Sbjct 1514812 TGAC---ACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGA 1514868 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || ||| || | || | ||| || || ||||| || |||| || ||| || | ||||| Sbjct 1514869 CCAGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCAGATTA 1514928 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| || | || |||| ||||||| ||||| |||| Sbjct 1514929 TAACATTCAAAAAGAATCCACACTTCATCTGGTTCTAAGACTTCGAGGAGGAA 1514981 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 ||||||||| || || || ||| | || || ||||| || ||| | ||| ||| |||| Sbjct 1510546 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1510605 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | || ||| ||||| ||||||||||| | || || | Sbjct 1510606 A-GACACAATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATTCCTCCAGACC 1510664 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | ||| || | || | ||| || || ||||| || |||| || ||| || | ||||| | Sbjct 1510665 AGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCAGATTATA 1510724 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||||| || | || |||| ||||||| ||||| |||| Sbjct 1510725 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTAAGACTTCGAGGAGGAA 1510775 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 ||||||||| || || || ||| | || || ||||| || ||| | ||| ||| |||| Sbjct 1515443 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1515502 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | || ||| ||||| ||||||||||| | || || | Sbjct 1515503 A-GACACAATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATTCCTCCAGACC 1515561 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | ||| || | || | ||| || || ||||| || |||| || ||| || | ||||| | Sbjct 1515562 AGCAACGATTAATCTTTGCAGGAAAGCAGCTCGAAGATGGGAGGACACTGTCAGATTATA 1515621 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||||| || | || |||| ||||||| ||||| |||| Sbjct 1515622 ACATTCAAAAAGAATCCACCCTTCATCTGGTTCTAAGACTTCGAGGAGGAA 1515672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 172/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 110257 TTATAAGAGATTTAAA-ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCG 110315 |||| ||| || ||| ||||| || |||||||| || | || || || ||||| ||| Sbjct 1509618 TTATTAGATCTTCAAATATGCAGATCTTTGTCAAGACACTTACAGGGAAGACCATCACCC 1509677 Query 110316 TCGAAA-CGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAA 110374 | ||| || ||| | | ||||| | | | || || |||||| |||||||| Sbjct 1509678 TGGAAGTCGAAGCTTCA-GATACGATAGAGAATGTCAAGGCGAAGATCCAGGACAAAGAG 1509736 Query 110375 GGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGA 110434 || | || || || ||| || | || | ||| || || ||||| || |||| || Sbjct 1509737 GGAATCCCTCCAGACCAGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGG 1509796 Query 110435 ACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGA 110494 ||| || | ||||| ||||||||||||||||| || | || |||| ||||||| ||| Sbjct 1509797 ACACTGTCAGATTATAACATTCAAAAAGAATCCACACTTCATCTGGTTCTAAGACTTCGA 1509856 Query 110495 GGGGGAA 110501 || |||| Sbjct 1509857 GGAGGAA 1509863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--C 110328 ||||||||| |||||||| || | || || |||||||| || | ||| || ||| | Sbjct 1515215 AATGCAAATCTTTGTCAAGACACTCACAGGGAAAACCATCACTCTGGAAGTCGAAGCTTC 1515274 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || | | | ||||| ||||| |||||||| || | ||| | Sbjct 1515275 TGAC---ACAATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAGGGAATTCCCCCTCA 1515331 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| ||| || | || | ||| || ||||| || || |||| || ||| | | ||||| Sbjct 1515332 TCAGCAACGATTAATCTTTGCTGGGAAACAACTTGAAGATGGAAGGACACTCTCTGATTA 1515391 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||||||| || | || |||| || ||||| ||||| |||| Sbjct 1515392 CAACATTCAAAAAGAATCCACACTTCATCTGGTTTTGAGACTTCGAGGAGGAA 1515444 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--C 110328 ||||||||| || ||||| ||| | || || |||||||| ||| | ||| || ||| | Sbjct 1515671 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1515730 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || | | | || ||| ||||| |||||||| || | || || Sbjct 1515731 TGAC---ACAATAGAGAATGTCAAAGCTAAGATCCAGGACAAAGAGGGAATACCTCCAGA 1515787 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| ||| || | || | ||| || || ||||| || |||| || ||| | | ||||| Sbjct 1515788 TCAGCAACGATTAATCTTTGCAGGAAAGCAGCTCGAAGATGGGAGGACACTCTCTGATTA 1515847 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||||||| || | || |||| | ||||| || || |||| Sbjct 1515848 CAACATTCAAAAAGAATCCACACTTCATCTGGTTCTGAGACTTCGGGGAGGAA 1515900 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--C 110328 ||||||||| || || || || | || || |||||||| || | ||| || ||| | Sbjct 1509862 AATGCAAATCTTCGTGAAGACACTCACAGGGAAAACCATCACTCTGGAAGTCGAAGCTTC 1509921 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || | | | ||||| |||||| |||||||| || | || || Sbjct 1509922 TGAC---ACAATTGAAAATGTAAAGGCGAAGATCCAGGACAAAGAGGGAATCCCTCCAGA 1509978 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || ||| || | || | ||| || || ||||| || |||| || ||| || | ||||| Sbjct 1509979 CCAGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCAGATTA 1510038 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| || | || |||| ||||||| ||||| |||| Sbjct 1510039 TAACATTCAAAAAGAATCCACACTTCATCTGGTTCTAAGACTTCGAGGAGGAA 1510091 >seq467 Length=2555529 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || ||| | || || |||||||| || | ||| ||| | Sbjct 1364386 AATGCAAATTTTTGTGAAGACTCTTACTGGAAAAACCATAACTCTGGAAGTTGAGGCGTC 1364327 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | || || || ||| |||||||||||| | || ||||| Sbjct 1364326 TGACACTATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCA 1364267 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||| | || | || |||||||| ||||| |||| | ||| | | |||||||| Sbjct 1364266 GCAGAGATTAATCTTCGCTGGTAAACAACTGGAAGATGGTCGTACACTTTCTGATTACAA 1364207 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||| ||||||||||| Sbjct 1364206 TATTCAGAAAGAATCTAC 1364189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412810072577138