Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_023611.1
Length=198533
Score E
Sequences producing significant alignments: (Bits) Value
seq202 100 4e-16
seq66 98.7 1e-15
>seq202
Length=497029
Score = 100 bits (110), Expect = 4e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 168526 AAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 168585
||||| | |||||| |||||||||| || || || ||||| | ||| || | ||
Sbjct 896 AAGAATTGTTATGGTTTATAAAAGGATCCACAAATGCAAAAGAGTTATCAGAGAAGAATG 955
Query 168586 TTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAA 168645
|| | ||||| | | ||| |||| ||| || |||||| ||||| ||||| || |
Sbjct 956 TTCATATTTGGGATGCAAATAGTTCGCGTACATACCTAGATTCTTGTGGATTTACTGACA 1015
Query 168646 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGC 168700
|| ||||||| ||| | || || | ||||||||||||||||||||| |||||
Sbjct 1016 GAGAAGAAGGAGATCTGGGACCTGTATATGGATTTCAATGGAGACATTATGGAGC 1070
>seq66
Length=1746113
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/185 (73%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 192949 TAAATTATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGA 193006
|| ||||||| || ||||| | ||||| ||| ||| | || || || | || |||
Sbjct 430910 TATATTATCCTCATAAACCTTTAGTTACTACAAGATCTATGGAATATCT--TAGATTTCG 430967
Query 193007 CGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCA 193066
|| | ||| ||| |||||| ||| ||||||||| || || || |||||||||||
Sbjct 430968 TGAATTGCCAGCTGGAATTAATAGTATAGTTGCTATATTGTGTTACACGGGTTATAATCA 431027
Query 193067 AGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGTACTATAAC 193126
|||||||||| ||||||||||| | || ||||||||||||| ||| | || ||
Sbjct 431028 AGAAGACAGTGTTATTTTAAATGCTAGTGCTGTTGAAAGAGGATTCTTTCGATCTGTATT 431087
Query 193127 TTATA 193131
|||||
Sbjct 431088 TTATA 431092
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498
|||||||| |||| || ||||||||| |||| | |||| | ||||||| || |||||
Sbjct 431527 CGTATACCACAAATCGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGCACGTGTGG 431585
Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558
|| ||| ||| ||||||||||||||| || | ||| | ||||||||| ||
Sbjct 431586 AATTCAATATAGACAGGAAGATATGCCATTTTCATGTGAAGGACTTACACCAGATATAAT 431645
Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608
|||||||| | ||||||||| | ||||| ||| ||| | ||||
Sbjct 431646 AATTAATCCTCACGCTATTCCATCGCGTATGACAATTGGTCACTTGATTG 431695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635127849714480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |