Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq202 100 4e-16 seq66 98.7 1e-15 >seq202 Length=497029 Score = 100 bits (110), Expect = 4e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 168526 AAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 168585 ||||| | |||||| |||||||||| || || || ||||| | ||| || | || Sbjct 896 AAGAATTGTTATGGTTTATAAAAGGATCCACAAATGCAAAAGAGTTATCAGAGAAGAATG 955 Query 168586 TTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAA 168645 || | ||||| | | ||| |||| ||| || |||||| ||||| ||||| || | Sbjct 956 TTCATATTTGGGATGCAAATAGTTCGCGTACATACCTAGATTCTTGTGGATTTACTGACA 1015 Query 168646 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGC 168700 || ||||||| ||| | || || | ||||||||||||||||||||| ||||| Sbjct 1016 GAGAAGAAGGAGATCTGGGACCTGTATATGGATTTCAATGGAGACATTATGGAGC 1070 >seq66 Length=1746113 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/185 (73%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 192949 TAAATTATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGA 193006 || ||||||| || ||||| | ||||| ||| ||| | || || || | || ||| Sbjct 430910 TATATTATCCTCATAAACCTTTAGTTACTACAAGATCTATGGAATATCT--TAGATTTCG 430967 Query 193007 CGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCA 193066 || | ||| ||| |||||| ||| ||||||||| || || || ||||||||||| Sbjct 430968 TGAATTGCCAGCTGGAATTAATAGTATAGTTGCTATATTGTGTTACACGGGTTATAATCA 431027 Query 193067 AGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGTACTATAAC 193126 |||||||||| ||||||||||| | || ||||||||||||| ||| | || || Sbjct 431028 AGAAGACAGTGTTATTTTAAATGCTAGTGCTGTTGAAAGAGGATTCTTTCGATCTGTATT 431087 Query 193127 TTATA 193131 ||||| Sbjct 431088 TTATA 431092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 |||||||| |||| || ||||||||| |||| | |||| | ||||||| || ||||| Sbjct 431527 CGTATACCACAAATCGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGCACGTGTGG 431585 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || ||| ||| ||||||||||||||| || | ||| | ||||||||| || Sbjct 431586 AATTCAATATAGACAGGAAGATATGCCATTTTCATGTGAAGGACTTACACCAGATATAAT 431645 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||| | ||||||||| | ||||| ||| ||| | |||| Sbjct 431646 AATTAATCCTCACGCTATTCCATCGCGTATGACAATTGGTCACTTGATTG 431695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635127849714480