Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq202 98.7 1e-15 seq66 89.7 6e-13 >seq202 Length=497029 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 ||||| | |||||| |||| ||||| || || || ||||| | ||| || | || Sbjct 896 AAGAATTGTTATGGTTTATAAAAGGATCCACAAATGCAAAAGAGTTATCAGAGAAGAATG 955 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 || | ||||| ||| ||| |||| ||| || |||||| || || |||||||| | Sbjct 956 TTCATATTTGGGATGCAAATAGTTCGCGTACATACCTAGATTCTTGTGGATTTACTGACA 1015 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 171777 || ||||||| ||| | || || | ||||||||||||||||||||| Sbjct 1016 GAGAAGAAGGAGATCTGGGACCTGTATATGGATTTCAATGGAGACAT 1062 >seq66 Length=1746113 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 192502 TAAATTATCCACAAAAACCACTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGA 192559 || ||||||| || ||||| | ||||| ||| ||| | || || || | || ||| Sbjct 430910 TATATTATCCTCATAAACCTTTAGTTACTACAAGATCTATGGAATATCT--TAGATTTCG 430967 Query 192560 CGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCA 192619 || | ||| ||| |||||| ||| ||||||||| || || || || ||||| || Sbjct 430968 TGAATTGCCAGCTGGAATTAATAGTATAGTTGCTATATTGTGTTACACGGGTTATAATCA 431027 Query 192620 AGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGCACTATAAC 192679 |||||||||| ||||||||||| | || ||||||||||||| ||| | || || Sbjct 431028 AGAAGACAGTGTTATTTTAAATGCTAGTGCTGTTGAAAGAGGATTCTTTCGATCTGTATT 431087 Query 192680 TTATA 192684 ||||| Sbjct 431088 TTATA 431092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628481970293760