Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq453 149 1e-30 seq333 86.0 1e-11 >seq453 Length=4956680 Score = 149 bits (164), Expect = 1e-30 Identities = 325/480 (68%), Gaps = 14/480 (3%) Strand=Plus/Plus Query 182729 ATGCCTTGAGTAATTTATCTCCGTGGTTACATTTTGGACATG-TATCTCCACAACGTGTT 182787 |||| | || ||||| ||||| ||||| |||||||| ||| |||| ||||||| | Sbjct 2751793 ATGCTCTTAGCAATTTGTCTCCTTGGTTTCATTTTGGT-ATGATATCAGTACAACGT--T 2751849 Query 182788 GC--TTTAGAAGTATTAAAATGTATACGAGAAAACaaa---aaaaaC-GTTGAAACGTTT 182841 || ||||||| || | | |||| | |||| | | |||| | |||||| | || Sbjct 2751850 GCATTTTAGAAATA----ACGGAATACAAAAAAATACATCCAAAATCTGTTGAATCTTTC 2751905 Query 182842 ATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACAT 182901 || || ||| ||| | || |||||||| ||||||||||| | ||| |||||| | Sbjct 2751906 ATGGAAGAAGCCATTATTCGACGAGAACTAAGCGATAATTTTTGCTTCTACAATAAAAAG 2751965 Query 182902 TACGATAGTGTTCAGTCTACTCACGCATGGGCTAGAAGAACATTAGAAGATCACGTTAAT 182961 || ||| | || | || | | ||| | | | ||||||||| | || || Sbjct 2751966 TATGATCTTATTGAAGGAGCTTATCCTTGGACAATAGAAACATTAGATAAACATCGGAAA 2752025 Query 182962 GATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCT 183021 ||| ||||||||| | |||||| | | ||| | ||||| | ||||| ||||| | Sbjct 2752026 GATAAAAGAAAGTATTTATATTCTTTAGACCAATTAGAAAATTCTGAAACTCATGATGAT 2752085 Query 183022 CTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGA 183081 |||||||||||| |||| || ||| | | ||| |||||||| ||||| | || Sbjct 2752086 TTATGGAATGCATGTCAAAATCAAATGGTAATGATAGGCAAAATGCACGGTTTTCTGAGA 2752145 Query 183082 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTAT 183141 ||||| ||||| ||||| || | |||||||| | |||| ||| ||| || | Sbjct 2752146 ATGTATTGGGCAAAAAAAATTTTAGAATGGACTGAATCTCCTGAAAGTGCCTTACAATGG 2752205 Query 183142 AGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT 183201 ||| ||| | || ||||||||| |||| || |||||||| || || |||||| Sbjct 2752206 GCTATTTATTTAAATAATAAGTACAGTATAGATGGCTGTGATCCTAATGGTTATGTAGGT 2752265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256 ||||||||||||||||||| || || | || ||| || ||| |||||||| |||| Sbjct 2752335 TAGGTTGTATGTGGTCTATATGTGGCATTCATGATCAAGGTTGGTCAGAAAGACAAATAT 2752394 Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTT 183309 ||||||| |||||||| ||||||||||| | | || |||||||||||| Sbjct 2752395 TTGGAAAAATAAGATACATGAATTATGAAGGATGCAAACGAAAATTTGATGTT 2752447 >seq333 Length=991201 Score = 86.0 bits (94), Expect = 1e-11 Identities = 211/316 (67%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 142887 AATATAGAATTAAGAATAGTCGCTACAGAAAATGCTATGAAATTTACAGACCAA--AAAA 142944 ||| | ||| |||||||||| | ||||||||| |||| | | |||| | || | || Sbjct 760090 AATTTGGAAGTAAGAATAGTAGTTACAGAAAAAGCTAAGCATTTTATGAAAGAAGCAGAA 760031 Query 142945 CT----TTAGGTATTCCTATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTA 143000 || | |||||||| ||| |||| | | || ||| || | ||| | | | Sbjct 760030 CTGCCTTCAGGTATTCAAGTTTTGTCAGACACTGTCGAATGGGCTGCCTGGCAGGACCGA 759971 Query 143001 CCCGATCCCGTCTTGCATATAGAACTTAGGAGA-TGGGCGGATGTTTTTCTTATAGCGCC 143059 ||||| || ||||| ||||| ||||| | ||||| ||| | || || || || || Sbjct 759970 GGAGATCCTGTATTGCACATAGA-CTTAGTCAAGTGGGCTGATTTGTTCCTAATCGCTCC 759912 Query 143060 CTTAACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATC 143119 ||| || || || || | || ||||| | ||||||||||||||| | | || | Sbjct 759911 ATTAGATGCTAACACATTGGGCAAGATAGCAAGTGGTATATGCGATAATATTTTGACCTG 759852 Query 143120 TATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCT 143179 | | | | || |||||| || ||| | |||||||| || |||||||| | Sbjct 759851 TGTCGCTCGTGCTTGGGATCAGTCGAAGCCTTTGATTTTTTGCCCTGCTATGAACACGAA 759792 Query 143180 TATGTGGGAACATCCT 143195 ||||||||||||||| Sbjct 759791 AATGTGGGAACATCCT 759776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903340440317760