Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq307 93.3 4e-14 seq467 84.2 2e-11 >seq307 Length=2169461 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| ||||| || || || ||||| || || | || |||||||| Sbjct 1515647 ATGAAGGGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTCCCATCTTCGAGCTG 1515588 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || | || |||||||| ||||| || ||||| ||||| |||||| Sbjct 1515587 CTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTT 1515528 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | ||| | ||||| | || ||||| || | ||||| ||||| || || Sbjct 1515527 AGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTTCCCTGT 1515468 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || ||||| || ||||| Sbjct 1515467 GAGAGTCTTCACGAAGATTTGCAT 1515444 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||||||||| || || | || | || |||||||| ||||| || ||||| ||| Sbjct 1510701 TCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTG 1510642 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| |||| | ||| | ||||| | || ||||| || | ||||| Sbjct 1510641 TCTTGGATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATA 1510582 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| || ||||| || ||||| Sbjct 1510581 GTTTTCCCTGTGAGAGTCTTCACGAAGATTTGCAT 1510547 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||||||||| || || | || | || |||||||| |||||||| || || ||| Sbjct 1515135 TCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTG 1515076 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||| | | |||| ||||| | | || || || | ||||| | Sbjct 1515075 TCCTGGATCTTTGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATG 1515016 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| || ||||| || ||||| Sbjct 1515015 GTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514981 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||||||||| || || | || | || |||||||| |||||||| || || ||| Sbjct 1510245 TCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTG 1510186 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | |||| ||||| | | || || || | ||||| | Sbjct 1510185 TCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATG 1510126 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| || ||||| || ||||| Sbjct 1510125 GTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510091 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||||||||| || || | || | || |||||||| |||||||| || || ||| Sbjct 1510473 TCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTG 1510414 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | |||| ||||| | | || || || | ||||| | Sbjct 1510413 TCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATG 1510354 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| || ||||| || ||||| Sbjct 1510353 GTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1510319 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||||||||| || || | || | || |||||||| |||||||| || || ||| Sbjct 1514907 TCTTCGAGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGGATTCCCTCTTTG 1514848 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | |||| ||||| | | || || || | ||||| | Sbjct 1514847 TCCTGGATCTTCGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGGGTGATG 1514788 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| || ||||| || ||||| Sbjct 1514787 GTTTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 1514753 >seq467 Length=2555529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/209 (71%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || ||||||||||| || | ||| | | | || || | || || || Sbjct 1366374 GTAGATTCCTTTTGTATATTGTAGTCAGAAAGTGTGCGTCCA-TCTTCTAATTGTTTACC 1366432 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | | |||||| || || |||||||| || || || ||| |||||||| Sbjct 1366433 AGCGAAGATCAATCTCTGCTGATCTGGTGGGATGCCCTCTTTATCCTGGAT-TTTTGCTT 1366491 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | | ||| || |||| ||| | |||||| || |||| | Sbjct 1366492 TAACATTCTCGATGGTGTCTGATGCCTCAACCTCGAGGGTTATGGTTTTTCCCGTCAATG 1366551 Query 133642 TTTTTACGAAAATCTGCATGGCTTATTTA 133670 | ||||||||||||||||||| |||| || Sbjct 1366552 TCTTTACGAAAATCTGCATGG-TTATCTA 1366579 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGC 133514 ||| | ||| || ||||| || ||||| ||||| | ||| ||| || || | Sbjct 1365455 ATGAAGGGTTGATTCTTTTTGGATATTATAATCAGAAA--GTGTACGTCCATCTTCCAAT 1365512 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | | ||||||||| |||||||| ||||||||||| ||| Sbjct 1365513 TGCTTGCCAGCAAAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGAT- 1365571 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || || | | |||| ||||| | | ||| || || | ||| | ||||| || Sbjct 1365572 TTTAGCTTTCACATTTTCAATGGTGTCTGACGCCTCAACTTCCAAGGTTATAGTTTTTCC 1365631 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| |||||||| Sbjct 1365632 AGTAAGGGTTTTCACGAATATCTGCAT 1365658 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGC 133514 ||| | ||| || ||||| || ||||| ||||| | ||| ||| || || | Sbjct 1365683 ATGAAGGGTTGATTCTTTTTGGATATTATAATCAGAAA--GTGTACGTCCATCTTCCAAT 1365740 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | | ||||||||| |||||||| ||||||||||| ||| Sbjct 1365741 TGCTTGCCAGCAAAGATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGAT- 1365799 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || || | | |||| || |||| | ||| || || | || | ||||| || Sbjct 1365800 TTTAGCTTTCACGTTTTCAATGGTATCGGACGCCTCAACTTCCAATGTTATTGTTTTTCC 1365859 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||||||||| |||||||| Sbjct 1365860 AGTAAGTGTTTTTACGAAGATCTGCAT 1365886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483382936065840