Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq311 127 5e-24
seq140 111 4e-19
seq105 95.1 3e-14
>seq311
Length=462165
Score = 127 bits (140), Expect = 5e-24
Identities = 122/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395
|| ||||| ||||||||| | |||||| | ||| ||||| ||||||| |||||| ||
Sbjct 198277 TTTAATAGACAACCATCATTACATAAATTAAGTATTATGGCACATAAAGCGAAAGTACTA 198218
Query 305396 TCTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454
| || || ||||| | || || | | ||| |||||| ||||||||||| ||||||||
Sbjct 198217 GA-GCATAGAACATTTAGGTTTAACGAATGTGTTTGTACCCCTTATAATGCTGATTTTGA 198159
Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAATCA 305488
|||||||||||||||| | ||| |||||||| ||
Sbjct 198158 TGGAGATGAAATGAATTTACATTTACCTCAAACA 198125
>seq140
Length=2205453
Score = 111 bits (122), Expect = 4e-19
Identities = 128/167 (77%), Gaps = 4/167 (2%)
Strand=Plus/Plus
Query 305323 TGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA 305382
||||| || | |||||| | ||||| | |||||||||||| |||||||| ||| |
Sbjct 612952 TGATTTAGTAATCTTCAATCGTCAACCGACTCTGCATAAAATGAGTATGATGGGTCACAG 613011
Query 305383 AGTCAAAGTATTATC-TGGATTGACATTTCGATTAAATGTAAG-TGCTTGTACGCCTTAT 305440
||| ||||| ||| | |||| | ||||| || | ||| |||| ||| || | ||||||
Sbjct 613012 AGTAAAAGTTTTACCATGGAGT-ACATTCCGTATGAATCTAAGTTGCACGT-CACCTTAT 613069
Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487
|| || |||||||| ||||||||||||||| | || ||||| || ||
Sbjct 613070 AACGCTGATTTTGACGGAGATGAAATGAATTTACACGTACCGCAGTC 613116
>seq105
Length=615523
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 110829 GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAA 110888
|||||| | |||||| | || ||||||||||| |||||||| | ||| | || ||||||
Sbjct 156237 GAAGAAAATAGAGCAAGAGAATTATTTTATGCTTTGTGGATTCCTGATCTTTTTATGAAA 156296
Query 110889 CGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCT 110948
|| ||| |||||||| | ||| || | |||||||| ||| |||||||| || ||
Sbjct 156297 CGAGTTTTGGAAAATGGTGTTTGGACTTTGATGTGTCCACATGAATCTCCTGGATTAGCT 156356
Query 110949 GATGT 110953
|||||
Sbjct 156357 GATGT 156361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186717518959626
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |