Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq311 127 5e-24 seq140 111 4e-19 seq105 95.1 3e-14 >seq311 Length=462165 Score = 127 bits (140), Expect = 5e-24 Identities = 122/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| ||||||||| | |||||| | ||| ||||| ||||||| |||||| || Sbjct 198277 TTTAATAGACAACCATCATTACATAAATTAAGTATTATGGCACATAAAGCGAAAGTACTA 198218 Query 305396 TCTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454 | || || ||||| | || || | | ||| |||||| ||||||||||| |||||||| Sbjct 198217 GA-GCATAGAACATTTAGGTTTAACGAATGTGTTTGTACCCCTTATAATGCTGATTTTGA 198159 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||||||||||| | ||| |||||||| || Sbjct 198158 TGGAGATGAAATGAATTTACATTTACCTCAAACA 198125 >seq140 Length=2205453 Score = 111 bits (122), Expect = 4e-19 Identities = 128/167 (77%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 305323 TGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA 305382 ||||| || | |||||| | ||||| | |||||||||||| |||||||| ||| | Sbjct 612952 TGATTTAGTAATCTTCAATCGTCAACCGACTCTGCATAAAATGAGTATGATGGGTCACAG 613011 Query 305383 AGTCAAAGTATTATC-TGGATTGACATTTCGATTAAATGTAAG-TGCTTGTACGCCTTAT 305440 ||| ||||| ||| | |||| | ||||| || | ||| |||| ||| || | |||||| Sbjct 613012 AGTAAAAGTTTTACCATGGAGT-ACATTCCGTATGAATCTAAGTTGCACGT-CACCTTAT 613069 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || || |||||||| ||||||||||||||| | || ||||| || || Sbjct 613070 AACGCTGATTTTGACGGAGATGAAATGAATTTACACGTACCGCAGTC 613116 >seq105 Length=615523 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 110829 GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAA 110888 |||||| | |||||| | || ||||||||||| |||||||| | ||| | || |||||| Sbjct 156237 GAAGAAAATAGAGCAAGAGAATTATTTTATGCTTTGTGGATTCCTGATCTTTTTATGAAA 156296 Query 110889 CGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCT 110948 || ||| |||||||| | ||| || | |||||||| ||| |||||||| || || Sbjct 156297 CGAGTTTTGGAAAATGGTGTTTGGACTTTGATGTGTCCACATGAATCTCCTGGATTAGCT 156356 Query 110949 GATGT 110953 ||||| Sbjct 156357 GATGT 156361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186717518959626