Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq467 118 7e-22 seq321 100 2e-16 seq307 93.3 3e-14 >seq467 Length=2555529 Score = 118 bits (130), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || ||||||||||| | |||||| | || || |||||||| || ||||| Sbjct 1365924 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1365983 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | || |||||| | || | |||||||||||| |||||| | || ||||| Sbjct 1365984 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTT-GGCTTTAACATT 1366042 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || || |||||| || | ||||| || || || || || || ||||| Sbjct 1366043 TTCAATTGTATCTGATGCTTCCACTTCGAGAGTGATGGTCTTTCCAGTCAATGTCTTTAC 1366102 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 1366103 GAAGATCTGCAT 1366114 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| || || |||||| || ||||| || || || Sbjct 1365203 ACCACCACGGAGACGAAGTACAAGATGGAGTGTCGACTCTTTCTGAATGTTATAGTCAGA 1365262 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||||| | || ||||||||||| || ||||||||||| | ||| || ||| | || Sbjct 1365263 TAATGTGCGTCCATCTTCCAATTGTTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGAGG 1365322 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | | |||| || | |||||| || || | Sbjct 1365323 AATACCTTCTTTGTCCTGAATTTT-AGCCTTTACATTCTCAATGGTGTCAGATGCCTCAA 1365381 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || || | ||||| || || |||||||| Sbjct 1365382 CTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACGAATATCTGCAT 1365430 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || ||||||||||| | |||||| | || || |||||||| || ||||| Sbjct 1364651 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1364710 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | || |||||| | || | |||||||||||| |||||| | | |||| Sbjct 1364711 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTT-AGCCTTTACATT 1364769 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| || || || || | || || ||||| || || | ||||| || Sbjct 1364770 CTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCAC 1364829 Query 33738 AAAGATCTGCAT 33749 || |||||||| Sbjct 1364830 GAATATCTGCAT 1364841 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || || ||||| || ||||| ||| | || |||||||| || || ||||| Sbjct 1365696 TCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAAG 1365755 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || || | |||||| ||| | || | |||||| ||||| ||||| ||||| | | Sbjct 1365756 ATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCA-CGTT 1365814 Query 33679 GTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| ||| ||| | || || || | || || ||||| || || | |||||||| Sbjct 1365815 TTCAATGGTATCGGACGCCTCAACTTCCAATGTTATTGTTTTTCCAGTAAGTGTTTTTAC 1365874 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 1365875 GAAGATCTGCAT 1365886 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||| | || ||||| || ||||| || ||||| || || Sbjct 1366116 CCACCACGGAGACGGAGCACAAGGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAT 1366175 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||||| | || ||||||||||| || || || |||| | || || ||| | || Sbjct 1366176 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAGTCTTTGTTGGTCTGGAGGA 1366235 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| ||||| || |||||| | || ||||| || | ||||| | ||| || Sbjct 1366236 ATACCCTCTTTATCCTGAATTTT-AGCTTTAACATTTTCAATAGTGTCTGAGGCTTCAAC 1366294 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || ||||| ||||||||||| Sbjct 1366295 TTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTTACGAAGATCTGCAT 1366342 Score = 86.0 bits (94), Expect = 4e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || ||||||||||| | |||||| | || || |||||||| || ||||| Sbjct 1364998 TCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTGTTTACCAGCAAAG 1365057 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGT 33655 ||||| | || |||||| | || | ||||||||||| Sbjct 1365058 ATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGT 1365094 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || ||||| ||||| ||||| || || |||||||| || ||||| || | || ||| Sbjct 1364177 ACTAAATGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCC 1364236 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||| || || || || || | |||||||||| | || | ||||||||||| | Sbjct 1364237 AGTTGTTTACCAGCGAAGATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGA 1364296 Query 33661 ATTTT 33665 ||||| Sbjct 1364297 ATTTT 1364301 >seq321 Length=1097274 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || || || ||||| ||||| || ||| | || || ||||||||||| || |||| Sbjct 785271 CTTTCTGGATATTATAATCAGAGAGGGTACGTCCATCTTCTAATTGTTTTCCAGCGAAAA 785330 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | |||||| ||||| | || | |||||||| || |||||| | || |||| Sbjct 785331 TTAGACGCTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTT-AGCTTTTACATTT 785389 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||| || | ||| || || | |||||| ||||| || || || ||||| || Sbjct 785390 TCGATGGTATCAGACGCTTCTACCTCGAGCGTGATAGTTTTGCCCGTCAAAGTTTTCACG 785449 Query 33739 AAGATCTGCATAGT 33752 || |||||||| || Sbjct 785450 AATATCTGCATCGT 785463 >seq307 Length=2169461 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||| ||| || ||| |||||||| ||||||||||| |||||||| | | | || Sbjct 1515427 AAAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAGAGTGTCCTTCCATCT 1515368 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || ||||| || || || ||||||| | || | || |||||||| Sbjct 1515367 TCAAGTTGTTTCCCAGCAAAGATTAATCGTTGCTGATGAGGGGGAATTCCCTCTTTGTCC 1515308 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || || | |||| || | ||||| | ||| || || | ||||| || Sbjct 1515307 TGGATCTT-TGCCTTTACATTTTCAATTGTGTCAGAAGCTTCGACTTCCAGAGTGATGGT 1515249 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| | || || |||||||| ||||| Sbjct 1515248 TTTCCCTGTGAGTGTCTTGACAAAGATTTGCAT 1515216 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || ||| |||||||| ||||||||||| |||||||| | | || || Sbjct 1515880 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCAGAGAGTGTCCTCCCATCTTCG 1515821 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| ||||| || || || ||||||||| | || | || |||||||| Sbjct 1515820 AGCTGCTTTCCTGCAAAGATTAATCGTTGCTGATCTGGAGGTATTCCCTCTTTGTCCTGG 1515761 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | || |||| || | ||||| | ||| || || | ||||| ||||| Sbjct 1515760 ATCTT-AGCTTTGACATTCTCTATTGTGTCAGAAGCTTCGACTTCCAGGGTGATGGTTTT 1515702 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| | || || || ||||| ||||| Sbjct 1515701 TCCTGTGAGAGTCTTGACGAAGATTTGCAT 1515672 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || ||| |||||||| ||||| ||||| || ||||| | | | || || Sbjct 1510755 ACCAGATGAAGTGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTTCCATCTTCG 1510696 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| || || || ||||| ||| | || | ||||||||||| Sbjct 1510695 AGCTGCTTCCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGG 1510636 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | || |||| || | ||||| | |||||| || | ||||| ||||| Sbjct 1510635 ATCTT-AGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTT 1510577 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| | || || || ||||| ||||| Sbjct 1510576 CCCTGTGAGAGTCTTCACGAAGATTTGCAT 1510547 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || ||| |||||||| ||||| ||||| || ||||| | | || || Sbjct 1515652 ACCAGATGAAGGGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTCCCATCTTCG 1515593 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| ||||| || || || ||||| ||| | || | ||||||||||| Sbjct 1515592 AGCTGCTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGG 1515533 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | || |||| || | ||||| | |||||| || | ||||| ||||| Sbjct 1515532 ATCTT-AGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTT 1515474 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| | || || || ||||| ||||| Sbjct 1515473 CCCTGTGAGAGTCTTCACGAAGATTTGCAT 1515444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328678897902720