Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq467 102 8e-17 seq321 95.1 1e-14 seq307 82.4 7e-11 >seq467 Length=2555529 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| ||||| ||||| || | ||||| |||||| || |||||||| | Sbjct 1364192 GATTCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCCAGTTGTTTACCAGCG 1364251 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||| | ||| |||||||| || ||||||||||| || ||||||| |||| Sbjct 1364252 AAGATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTCACG 1364311 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | || ||| ||||| | || | ||||| ||||| ||||| || Sbjct 1364312 TTTTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTTTTTCCAGTAAGAGTCTTC 1364371 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 1364372 ACAAAAATTTGCAT 1364385 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||| | | |||| ||||||||||| ||||| ||| | || || |||||| | || Sbjct 1365911 ATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTG 1365970 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 |||||| | | |||| | | |||||||||||||| || |||||||| || |||||| Sbjct 1365971 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTT 1366030 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 ||| | | ||| | ||||| | | |||||||||| || | || || ||||| Sbjct 1366031 GGCTTTAACATTTTCAATTGTATCTGATGCTTCCACTTCGAGAGTGATGGTCTTTCCAGT 1366090 Query 132100 CAGAGTTTTTATGAAAATCTGCAT 132123 || || |||| ||| |||||||| Sbjct 1366091 CAATGTCTTTACGAAGATCTGCAT 1366114 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||| | | |||| ||||||||||| ||||| ||| | || || |||||| | || Sbjct 1364638 ATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTG 1364697 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 |||||| | | |||| | | |||||||||||||| || |||||||| || |||||| Sbjct 1364698 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTT 1364757 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 || | | || | || || | | ||| ||||| | || | ||||| ||||| Sbjct 1364758 AGCCTTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGT 1364817 Query 132100 CAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| | ||| |||||||| Sbjct 1364818 AAGGGTTTTCACGAATATCTGCAT 1364841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||||||||| |||||||||||||| | || ||| |||||| | ||| ||||| | Sbjct 1364418 TTGACTCTTTCTGAATGTTGTAGTCAGATAGTGTGCGCCCATCTTCTAACTGCTTACCAG 1364477 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | | || || ||||| || |||||||||||||| ||||| || | Sbjct 1364478 CGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCTTTATCCTGGATTTTAGCCTTAA 1364537 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||| || | | ||| ||||| | || | || || ||||| ||||||| Sbjct 1364538 CGTTCTCAATAGTGTCTGATGCCTCAACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTTT 1364597 Query 132108 TTATGAAAATCTGCAT 132123 | | || |||||||| Sbjct 1364598 TCACAAAGATCTGCAT 1364613 >seq321 Length=1097274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 131959 GGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTAT 132018 |||||| |||||| | ||||| || | | ||||||||||||||||| || || || Sbjct 785296 GGTACGTCCATCTTCTAATTGTTTTCCAGCGAAAATTAGACGCTGTTGATCAGGTGGAAT 785355 Query 132019 GCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTC 132078 ||||||||||| |||||| ||| | | ||| | ||||| | || || || || Sbjct 785356 TCCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCGATGGTATCAGACGCTTCTACCTC 785415 Query 132079 GACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||| | ||||| || |||| |||||| | ||| |||||||| Sbjct 785416 GAGCGTGATAGTTTTGCCCGTCAAAGTTTTCACGAATATCTGCAT 785460 >seq307 Length=2169461 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| ||| | | | || |||||||||||||| || || || || | | |||||| Sbjct 1515653 AACCAGATGAAGGGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTCCCATCTTC 1515594 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || || | | |||||| || || || |||||||| || |||||||| || Sbjct 1515593 GAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTG 1515534 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || ||| | | || | || || | | |||||||| | || | ||||| Sbjct 1515533 GATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTT 1515474 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || | ||| || ||||| Sbjct 1515473 CCCTGTGAGAGTCTTCACGAAGATTTGCAT 1515444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476573869427760