Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq467 102 8e-17
seq321 95.1 1e-14
seq307 82.4 7e-11
>seq467
Length=2555529
Score = 102 bits (112), Expect = 8e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| ||||| ||||| ||||| || | ||||| |||||| || |||||||| |
Sbjct 1364192 GATTCTTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCCAGTTGTTTACCAGCG 1364251
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||||| | ||| |||||||| || ||||||||||| || ||||||| ||||
Sbjct 1364252 AAGATTAATCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTCACG 1364311
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||| || | || ||| ||||| | || | ||||| ||||| ||||| ||
Sbjct 1364312 TTTTCAATAGTGTCAGACGCCTCAACTTCCAGAGTTATGGTTTTTCCAGTAAGAGTCTTC 1364371
Query 132110 ATGAAAATCTGCAT 132123
| ||||| |||||
Sbjct 1364372 ACAAAAATTTGCAT 1364385
Score = 102 bits (112), Expect = 8e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979
||| | | |||| ||||||||||| ||||| ||| | || || |||||| | ||
Sbjct 1365911 ATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTG 1365970
Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039
|||||| | | |||| | | |||||||||||||| || |||||||| || ||||||
Sbjct 1365971 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTT 1366030
Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099
||| | | ||| | ||||| | | |||||||||| || | || || |||||
Sbjct 1366031 GGCTTTAACATTTTCAATTGTATCTGATGCTTCCACTTCGAGAGTGATGGTCTTTCCAGT 1366090
Query 132100 CAGAGTTTTTATGAAAATCTGCAT 132123
|| || |||| ||| ||||||||
Sbjct 1366091 CAATGTCTTTACGAAGATCTGCAT 1366114
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979
||| | | |||| ||||||||||| ||||| ||| | || || |||||| | ||
Sbjct 1364638 ATGAAGGGTTGATTCTTTTTGAATATTGTAATCGGATAACGTGCGTCCATCTTCTAATTG 1364697
Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039
|||||| | | |||| | | |||||||||||||| || |||||||| || ||||||
Sbjct 1364698 TTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTT 1364757
Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099
|| | | || | || || | | ||| ||||| | || | ||||| |||||
Sbjct 1364758 AGCCTTTACATTCTCAATGGTGTCAGATGCCTCAACTTCCAAGGTTATAGTTTTTCCAGT 1364817
Query 132100 CAGAGTTTTTATGAAAATCTGCAT 132123
|| ||||| | ||| ||||||||
Sbjct 1364818 AAGGGTTTTCACGAATATCTGCAT 1364841
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||||||||| |||||||||||||| | || ||| |||||| | ||| ||||| |
Sbjct 1364418 TTGACTCTTTCTGAATGTTGTAGTCAGATAGTGTGCGCCCATCTTCTAACTGCTTACCAG 1364477
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
|||| | | || || ||||| || |||||||||||||| ||||| || |
Sbjct 1364478 CGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCTTTATCCTGGATTTTAGCCTTAA 1364537
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | ||| || | | ||| ||||| | || | || || ||||| |||||||
Sbjct 1364538 CGTTCTCAATAGTGTCTGATGCCTCAACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTTT 1364597
Query 132108 TTATGAAAATCTGCAT 132123
| | || ||||||||
Sbjct 1364598 TCACAAAGATCTGCAT 1364613
>seq321
Length=1097274
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 131959 GGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTAT 132018
|||||| |||||| | ||||| || | | ||||||||||||||||| || || ||
Sbjct 785296 GGTACGTCCATCTTCTAATTGTTTTCCAGCGAAAATTAGACGCTGTTGATCAGGTGGAAT 785355
Query 132019 GCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTC 132078
||||||||||| |||||| ||| | | ||| | ||||| | || || || ||
Sbjct 785356 TCCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCGATGGTATCAGACGCTTCTACCTC 785415
Query 132079 GACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| ||| | ||||| || |||| |||||| | ||| ||||||||
Sbjct 785416 GAGCGTGATAGTTTTGCCCGTCAAAGTTTTCACGAATATCTGCAT 785460
>seq307
Length=2169461
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||| ||| | | | || |||||||||||||| || || || || | | ||||||
Sbjct 1515653 AACCAGATGAAGGGTGGATTCTTTTTGAATGTTATAATCTGACAGTGTCCTCCCATCTTC 1515594
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
|||||| || || | | |||||| || || || |||||||| || |||||||| ||
Sbjct 1515593 GAGCTGCTTTCCTGCAAAGATTAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTG 1515534
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
|| || ||| | | || | || || | | |||||||| | || | |||||
Sbjct 1515533 GATCTTAGCTTTGACATTCTCTATTGTGTCTGAGGCTTCCACTTCTAGGGTGATAGTTTT 1515474
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || ||||| || | ||| || |||||
Sbjct 1515473 CCCTGTGAGAGTCTTCACGAAGATTTGCAT 1515444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476573869427760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |