Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq42 95.1 4e-16 seq251 89.7 2e-14 >seq42 Length=2424936 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | | Sbjct 304621 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATC 304562 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 304561 CCGGGTTTCGGC 304550 Score = 95.1 bits (104), Expect = 4e-16 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 2765 TATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 544232 TATGTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAACGGTCCCTGGTT 544173 Query 2824 CAACCCCGGGCTTCAGC 2840 | | |||||| ||| || Sbjct 544172 CGATCCCGGGTTTCGGC 544156 Score = 93.3 bits (102), Expect = 1e-15 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| Sbjct 305467 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATCCCGG 305408 Query 2833 GCTT 2836 | || Sbjct 305407 GTTT 305404 Score = 89.7 bits (98), Expect = 2e-14 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||| Sbjct 304768 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATCCCGG 304709 Query 2833 GCTT 2836 | || Sbjct 304708 GTTT 304705 >seq251 Length=712514 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||| | | Sbjct 235461 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATC 235520 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 235521 CCGGGTTTCGGC 235532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848513757570