Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq105 188 1e-42 seq305 104 3e-17 >seq105 Length=615523 Score = 188 bits (208), Expect = 1e-42 Identities = 227/309 (73%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 68622 TTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCT 68681 ||||||||| ||| | | ||||||| ||| || || | || | ||| | | ||| Sbjct 157522 TTGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCT 157463 Query 68682 CTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCT 68741 || |||||| ||| | | ||| ||||| ||||| |||||||| || || || |||| Sbjct 157462 TTCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCG 157403 Query 68742 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGC 68801 || || ||||| ||||| || || ||||| | ||||||||||||||||| |||||| || Sbjct 157402 TCGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGC 157343 Query 68802 AGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGAT 68861 || ||||| |||||||| || || | ||| ||| |||||| | || ||| || || Sbjct 157342 GGTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAAT 157283 Query 68862 TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTA 68921 ||| |||||||| | ||| ||||| | ||||| |||| ||| ||||| | ||| || Sbjct 157282 TTTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGTGTAACGTTCCACATATCATA 157223 Query 68922 TTGTAGAAT 68930 ||||| ||| Sbjct 157222 TTGTAAAAT 157214 Score = 163 bits (180), Expect = 4e-35 Identities = 221/308 (72%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 || ||||||||||| ||||| | ||| || | |||||| | ||||||||||||||||||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 | || | |||| || |||||||||||||||||||| | ||||| || |||||||| Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || || || |||||||| | | ||||||||| |||| ||| |||| || | Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACCAGCTATTGGTGTA 155990 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 ||||| || || || | | | ||| || || || || || ||| || | Sbjct 155989 CCTCTAGCTCGTATGCAATGTACATTTAGTCCAATACCACCAGCTGATTTGCTAATCAAT 155930 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 ||||| | |||||||| ||||| || || || |||||||| || |||| |||||| Sbjct 155929 GCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAAAGAAGG 155870 Query 69964 AAACAGCT 69971 ||||| || Sbjct 155869 AAACAACT 155862 Score = 152 bits (168), Expect = 7e-32 Identities = 131/162 (81%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||||| |||||||||||| |||||||||||| | ||||||||| |||||| |||| Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624 |||||||| | ||| ||| ||| ||| ||||||||||||||| ||||| |||||||| Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272 Query 69625 AGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 | ||| ||| | ||||| | |||||||||||| || ||| Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230 Score = 132 bits (146), Expect = 7e-26 Identities = 190/265 (72%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || |||||||| ||| | ||| | ||| ||| |||||||||||||| || || || Sbjct 155795 CTGGACATTTGCTGAGTCACAGTACATGCAGAAAACAATGTAGGAGATGCATGTGTAAAA 155736 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAAT 70088 || ||| || | | |||||| ||||| || ||| ||| ||||| ||| |||||| Sbjct 155735 TATCGTTCTGACAAAAAATTGTAAGTTTCTATGGCTTTTTCAATATCTTCACC-ATGAAT 155677 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 | | ||||| | |||||||||||| || || | ||| || ||| || |||||| Sbjct 155676 AGCAACTGCGACTCTCATCAACATATGTTGTGGCCTTTCAACAACTTTTCCATGTATTTT 155617 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 | ||| || | |||| || |||||||| |||||||| ||||| ||| ||||| || Sbjct 155616 TAGCAGATAGCTTCTTTCAAGCGTTTTAAAGCCAAAATAATTGTAACTAAAATCTCTATC 155557 Query 70209 GTAAATAATAACAGAATTTAGTTTA 70233 ||||| || | ||||||| |||| Sbjct 155556 ATAAATTATTGCTGAATTTAATTTA 155532 Score = 114 bits (126), Expect = 2e-20 Identities = 261/392 (67%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| |||||||||||||| |||||| ||| ||||||||||| ||||| ||||| | Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 ||| |||| ||||| | ||| | || | ||| ||| | || ||||| ||| Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATTTTTGTCACCTTTTTAAGTTTTTGAA 156745 Query 69236 AATCAAATCGTCCATCTATA-------ACAAACATATTCAGTGCTACAGATGCTAGATTA 69288 |||| || ||| || | ||||||||||| | || | || || | ||| Sbjct 156744 AATCGAA-CGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAATTG 156686 Query 69289 CAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACAT 69348 || || || || |||| | | | ||| || | | |||||||||| |||||||| Sbjct 156685 CATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTACTC 156626 Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 || || || || | ||||||||||| |||| || ||| || |||||||| ||| Sbjct 156625 TTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCATA 156566 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468 |||| || || || || | |||| | | |||| | |||| | | ||||| | Sbjct 156565 TACGGGGTTCCTGTCTCTACTTGAGCTATAAGGATAGCTGTCCATAAATCTCTAGCTTGA 156506 Query 69469 ATTACGGTCTTGTAACGCTTCTCTTTTTCATA 69500 || | ||| | || ||||| |||||||| Sbjct 156505 ATCTGGCGCTTAAACCGTTTCTCATTTTCATA 156474 >seq305 Length=1407860 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || ||| ||||| |||||||| || ||| ||| | || ||||||||| ||||| | Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || ||| |||| || || |||| ||| |||| ||| || || || || ||| | || || Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 || || ||| |||| | ||| || | | ||||||||||||||| || || || Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACATGCAAA 686230 Query 39625 GTCACAATGTAGGCCCT 39641 |||||||||| |||| Sbjct 686231 ATCACAATGTAATCCCT 686247 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 || ||||| ||||| | |||||||||||||| | ||||| || || | || || Sbjct 686661 TACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAG 686720 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || ||||| | ||| || || || ||||| || || ||||| ||| | | |||| Sbjct 686721 CCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTT 686780 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATG 40050 ||||| || ||||||||| || ||||||||||| |||||||| Sbjct 686781 TCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATG 686824 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||| ||| | ||| || || || ||||| ||||| || || | ||| | Sbjct 686325 CCTCATCCCTAGAAATAAGTTCATTGCTGAACGTAAGTCCTGGCATAAGTCCTCTCTTCT 686384 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || ||||||||||| ||| ||||| || ||||||||||| ||||||| Sbjct 686385 TTAACCAGAAAATGGCAGCAAAGCTACCACTGAAGAAAATACCTTCTACTGCGGCAAATG 686444 Query 39759 CAACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | || | | || | || | || |||| | |||||| ||| |||||||| || Sbjct 686445 CGACTACACGTTCAGGGAAAGTAGCGGTTTCATGGTTTATCCAATTCAATGCCCAATTAG 686504 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||| || ||||| || | |||| || |||||||| Sbjct 686505 CTTTTTTTGCAACACAGGGTAAATTTTCAATGGCATTAAA 686544 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATC--TTCT-TGTGACATAACTCCCATTTT 39327 ||||||||| ||| | | ||||| | | || |||| | | ||| |||||| || Sbjct 685803 TTAAAAGTCGGCATTAACTGTAAAATTACTTTCAATTCTATCTTGCATGACTCCCCACTT 685862 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||||||||| ||||| |||||| ||||| || ||||| |||||||| || |||| || Sbjct 685863 TTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGCTC 685922 Query 39388 CATGAAATCAAACGGATT 39405 ||| |||||||| ||||| Sbjct 685923 CATAAAATCAAATGGATT 685940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686854997868240