Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq105 188 1e-42
seq305 104 3e-17
>seq105
Length=615523
Score = 188 bits (208), Expect = 1e-42
Identities = 227/309 (73%), Gaps = 0/309 (0%)
Strand=Plus/Minus
Query 68622 TTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCT 68681
||||||||| ||| | | ||||||| ||| || || | || | ||| | | |||
Sbjct 157522 TTGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCT 157463
Query 68682 CTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCT 68741
|| |||||| ||| | | ||| ||||| ||||| |||||||| || || || ||||
Sbjct 157462 TTCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCG 157403
Query 68742 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGC 68801
|| || ||||| ||||| || || ||||| | ||||||||||||||||| |||||| ||
Sbjct 157402 TCGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGC 157343
Query 68802 AGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGAT 68861
|| ||||| |||||||| || || | ||| ||| |||||| | || ||| || ||
Sbjct 157342 GGTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAAT 157283
Query 68862 TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTA 68921
||| |||||||| | ||| ||||| | ||||| |||| ||| ||||| | ||| ||
Sbjct 157282 TTTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGTGTAACGTTCCACATATCATA 157223
Query 68922 TTGTAGAAT 68930
||||| |||
Sbjct 157222 TTGTAAAAT 157214
Score = 163 bits (180), Expect = 4e-35
Identities = 221/308 (72%), Gaps = 0/308 (0%)
Strand=Plus/Minus
Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723
|| ||||||||||| ||||| | ||| || | |||||| | |||||||||||||||||||
Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110
Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783
| || | |||| || |||||||||||||||||||| | ||||| || ||||||||
Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050
Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843
|| || || |||||||| | | ||||||||| |||| ||| |||| || |
Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACCAGCTATTGGTGTA 155990
Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903
||||| || || || | | | ||| || || || || || ||| || |
Sbjct 155989 CCTCTAGCTCGTATGCAATGTACATTTAGTCCAATACCACCAGCTGATTTGCTAATCAAT 155930
Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963
||||| | |||||||| ||||| || || || |||||||| || |||| ||||||
Sbjct 155929 GCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAAAGAAGG 155870
Query 69964 AAACAGCT 69971
||||| ||
Sbjct 155869 AAACAACT 155862
Score = 152 bits (168), Expect = 7e-32
Identities = 131/162 (81%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564
||||||| |||||||||||| |||||||||||| | ||||||||| |||||| ||||
Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332
Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624
|||||||| | ||| ||| ||| ||| ||||||||||||||| ||||| ||||||||
Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272
Query 69625 AGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666
| ||| ||| | ||||| | |||||||||||| || |||
Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230
Score = 132 bits (146), Expect = 7e-26
Identities = 190/265 (72%), Gaps = 2/265 (1%)
Strand=Plus/Minus
Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029
|| |||||||| ||| | ||| | ||| ||| |||||||||||||| || || ||
Sbjct 155795 CTGGACATTTGCTGAGTCACAGTACATGCAGAAAACAATGTAGGAGATGCATGTGTAAAA 155736
Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAAT 70088
|| ||| || | | |||||| ||||| || ||| ||| ||||| ||| ||||||
Sbjct 155735 TATCGTTCTGACAAAAAATTGTAAGTTTCTATGGCTTTTTCAATATCTTCACC-ATGAAT 155677
Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148
| | ||||| | |||||||||||| || || | ||| || ||| || ||||||
Sbjct 155676 AGCAACTGCGACTCTCATCAACATATGTTGTGGCCTTTCAACAACTTTTCCATGTATTTT 155617
Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208
| ||| || | |||| || |||||||| |||||||| ||||| ||| ||||| ||
Sbjct 155616 TAGCAGATAGCTTCTTTCAAGCGTTTTAAAGCCAAAATAATTGTAACTAAAATCTCTATC 155557
Query 70209 GTAAATAATAACAGAATTTAGTTTA 70233
||||| || | ||||||| ||||
Sbjct 155556 ATAAATTATTGCTGAATTTAATTTA 155532
Score = 114 bits (126), Expect = 2e-20
Identities = 261/392 (67%), Gaps = 8/392 (2%)
Strand=Plus/Minus
Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175
|||| |||||||||||||| |||||| ||| ||||||||||| ||||| ||||| |
Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805
Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235
||| |||| ||||| | ||| | || | ||| ||| | || ||||| |||
Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATTTTTGTCACCTTTTTAAGTTTTTGAA 156745
Query 69236 AATCAAATCGTCCATCTATA-------ACAAACATATTCAGTGCTACAGATGCTAGATTA 69288
|||| || ||| || | ||||||||||| | || | || || | |||
Sbjct 156744 AATCGAA-CGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAATTG 156686
Query 69289 CAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACAT 69348
|| || || || |||| | | | ||| || | | |||||||||| ||||||||
Sbjct 156685 CATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTACTC 156626
Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408
|| || || || | ||||||||||| |||| || ||| || |||||||| |||
Sbjct 156625 TTAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGATCTTTGTAAAGCATA 156566
Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468
|||| || || || || | |||| | | |||| | |||| | | ||||| |
Sbjct 156565 TACGGGGTTCCTGTCTCTACTTGAGCTATAAGGATAGCTGTCCATAAATCTCTAGCTTGA 156506
Query 69469 ATTACGGTCTTGTAACGCTTCTCTTTTTCATA 69500
|| | ||| | || ||||| ||||||||
Sbjct 156505 ATCTGGCGCTTAAACCGTTTCTCATTTTCATA 156474
>seq305
Length=1407860
Score = 104 bits (114), Expect = 3e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
|| ||| ||||| |||||||| || ||| ||| | || ||||||||| ||||| |
Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
|| ||| |||| || || |||| ||| |||| ||| || || || || ||| | || ||
Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170
Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624
|| || ||| |||| | ||| || | | ||||||||||||||| || || ||
Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACATGCAAA 686230
Query 39625 GTCACAATGTAGGCCCT 39641
|||||||||| ||||
Sbjct 686231 ATCACAATGTAATCCCT 686247
Score = 102 bits (112), Expect = 1e-16
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946
|| ||||| ||||| | |||||||||||||| | ||||| || || | || ||
Sbjct 686661 TACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAG 686720
Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006
|| || ||||| | ||| || || || ||||| || || ||||| ||| | | ||||
Sbjct 686721 CCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCAACAAGATTT 686780
Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATG 40050
||||| || ||||||||| || ||||||||||| ||||||||
Sbjct 686781 TCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATG 686824
Score = 93.3 bits (102), Expect = 6e-14
Identities = 153/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||| ||| ||| | ||| || || || ||||| ||||| || || | ||| |
Sbjct 686325 CCTCATCCCTAGAAATAAGTTCATTGCTGAACGTAAGTCCTGGCATAAGTCCTCTCTTCT 686384
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | ||| || ||||||||||| ||| ||||| || ||||||||||| |||||||
Sbjct 686385 TTAACCAGAAAATGGCAGCAAAGCTACCACTGAAGAAAATACCTTCTACTGCGGCAAATG 686444
Query 39759 CAACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815
| || | | || | || | || |||| | |||||| ||| |||||||| ||
Sbjct 686445 CGACTACACGTTCAGGGAAAGTAGCGGTTTCATGGTTTATCCAATTCAATGCCCAATTAG 686504
Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855
|||| || ||||| || | |||| || ||||||||
Sbjct 686505 CTTTTTTTGCAACACAGGGTAAATTTTCAATGGCATTAAA 686544
Score = 89.7 bits (98), Expect = 7e-13
Identities = 104/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATC--TTCT-TGTGACATAACTCCCATTTT 39327
||||||||| ||| | | ||||| | | || |||| | | ||| |||||| ||
Sbjct 685803 TTAAAAGTCGGCATTAACTGTAAAATTACTTTCAATTCTATCTTGCATGACTCCCCACTT 685862
Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387
||||||||| ||||| |||||| ||||| || ||||| |||||||| || |||| ||
Sbjct 685863 TTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGCTC 685922
Query 39388 CATGAAATCAAACGGATT 39405
||| |||||||| |||||
Sbjct 685923 CATAAAATCAAATGGATT 685940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686854997868240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |