Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq202 125 6e-24 seq305 105 5e-18 >seq202 Length=497029 Score = 125 bits (138), Expect = 6e-24 Identities = 183/255 (72%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 40691 GTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATG 40750 |||||| || ||||||||||| || ||||||||| || | | ||||||| ||||||| Sbjct 849 GTTTCCATTATTAACTACAAAACAAGTGTTTTGGAGGGGAGTAGTAGAAGAATTGTTATG 908 Query 40751 GTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGA-AAGAGGAGTGCACATTTGGA 40809 |||||| ||||| | || ||||| || | |||||||| |||| || || |||||| Sbjct 909 GTTTATAAAAGGATCCACAAATGCAAAAGAGTTATCAGAGAAGA-ATGTTCATATTTGGG 967 Query 40810 ATGCGCACAGTTCTAAAACATATTT---GTCTAGCATAGGATTACAAGATAGGGATGAAG 40866 |||| | ||||| ||||| | ||| | ||||| || || || |||| Sbjct 968 ATGCAAATAGTTCGCGTACATACCTAGATTCTTG---TGGATTTACTGACAGAGAAGAAG 1024 Query 40867 GTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTA 40926 | ||||| || ||||| ||||||||||| | | |||||| ||||||| | || | | | Sbjct 1025 GAGATCTGGGACCTGTATATGGATTTCAATGGAGACATTATGGAGCAGAGTACAAGAACA 1084 Query 40927 TGTACTCTGATTATA 40941 || | || |||||| Sbjct 1085 TGCATACTAATTATA 1099 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41010 ATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCAT 41069 |||||| ||| || ||||||||| || ||| ||||| || || || |||||| Sbjct 1258 ATAATAATGTCAGCATGGAACCCAGTTGATATACCAAAAATGGCTTTACCTCCATGTCAT 1317 Query 41070 TTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATC 41128 | ||| ||| |||||||| || | ||||| ||| | || || || |||||||||||| Sbjct 1318 T-GTTTTGTACAGTTTTATGTAAGTAATGGAGAATTATCGTGCCAGTTGTATCAAAGAAG 1376 Query 41129 AGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATAT 41188 | |||||||| || || || || ||||||||||| ||| | ||| | || || || Sbjct 1377 CGCCGACATGGGTCTTGGAGTACCATTTAACATAGCATCGTATTCACTGTTAACTTACAT 1436 Query 41189 GATTGCACACGTTACCAATTTAAA 41212 | | || |||||||| ||| |||| Sbjct 1437 GTTAGCTCACGTTACAAATCTAAA 1460 >seq305 Length=1407860 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || || ||||| |||||| || || || |||||||| || || || || |||||| Sbjct 686842 GAGAAGCATTTCATATCTCATGTATTAGCATTTTTTGCAGCCTCTGATGGAATTGTCAAT 686783 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 |||||| | ||| || ||| || ||||| || || |||| ||||| ||||| ||| Sbjct 686782 GAAAATCTTGTTGAACGATTTAGTCAGGAAGTACAGATAACAGAGGCACGTTGTTTCTAT 686723 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || || ||| | || || |||||| | ||||| ||||||||| | | || |||||| Sbjct 686722 GGCTTCCAAGTAGCTATGGAAAATGTGCATTCAGAAATGTACTCATTATTAATTGATACG 686663 Query 44009 TACATCAAAGATG 44021 ||||| ||||| Sbjct 686662 TACATTGCAGATG 686650 Score = 93.3 bits (102), Expect = 3e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| ||||||| |||||||| ||||||||||||||||| | Sbjct 685942 AAAATCCATTTGATTTTATGGAGCATATTTCTTTGGAAGGTAAAACAAACTTTTTTGAGA 685883 Query 44553 AACGCGTTGGAGAATATCA 44571 || ||||||||||| || Sbjct 685882 AAAAAGTTGGAGAATACCA 685864 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 |||||||| ||| ||||| || ||||| ||||||| | ||| || ||||||||||| Sbjct 687065 GAAAATCCACGTAGATTTGTTGTCTTTCCTATTCAATGGCCTGATATTTGGCAAATGTAT 687006 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 |||||||| | || || || ||||| | || ||||||||| | |||| Sbjct 687005 AAAAAAGCGGAAGCTTCCTTCTGGACTGTGGAGGAAGTTGATCTTTCTAA 686956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397425647527330