Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq202 125 6e-24
seq305 105 5e-18
>seq202
Length=497029
Score = 125 bits (138), Expect = 6e-24
Identities = 183/255 (72%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 40691 GTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATG 40750
|||||| || ||||||||||| || ||||||||| || | | ||||||| |||||||
Sbjct 849 GTTTCCATTATTAACTACAAAACAAGTGTTTTGGAGGGGAGTAGTAGAAGAATTGTTATG 908
Query 40751 GTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGA-AAGAGGAGTGCACATTTGGA 40809
|||||| ||||| | || ||||| || | |||||||| |||| || || ||||||
Sbjct 909 GTTTATAAAAGGATCCACAAATGCAAAAGAGTTATCAGAGAAGA-ATGTTCATATTTGGG 967
Query 40810 ATGCGCACAGTTCTAAAACATATTT---GTCTAGCATAGGATTACAAGATAGGGATGAAG 40866
|||| | ||||| ||||| | ||| | ||||| || || || ||||
Sbjct 968 ATGCAAATAGTTCGCGTACATACCTAGATTCTTG---TGGATTTACTGACAGAGAAGAAG 1024
Query 40867 GTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTA 40926
| ||||| || ||||| ||||||||||| | | |||||| ||||||| | || | | |
Sbjct 1025 GAGATCTGGGACCTGTATATGGATTTCAATGGAGACATTATGGAGCAGAGTACAAGAACA 1084
Query 40927 TGTACTCTGATTATA 40941
|| | || ||||||
Sbjct 1085 TGCATACTAATTATA 1099
Score = 109 bits (120), Expect = 4e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 41010 ATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCAT 41069
|||||| ||| || ||||||||| || ||| ||||| || || || ||||||
Sbjct 1258 ATAATAATGTCAGCATGGAACCCAGTTGATATACCAAAAATGGCTTTACCTCCATGTCAT 1317
Query 41070 TTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATC 41128
| ||| ||| |||||||| || | ||||| ||| | || || || ||||||||||||
Sbjct 1318 T-GTTTTGTACAGTTTTATGTAAGTAATGGAGAATTATCGTGCCAGTTGTATCAAAGAAG 1376
Query 41129 AGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATAT 41188
| |||||||| || || || || ||||||||||| ||| | ||| | || || ||
Sbjct 1377 CGCCGACATGGGTCTTGGAGTACCATTTAACATAGCATCGTATTCACTGTTAACTTACAT 1436
Query 41189 GATTGCACACGTTACCAATTTAAA 41212
| | || |||||||| ||| ||||
Sbjct 1437 GTTAGCTCACGTTACAAATCTAAA 1460
>seq305
Length=1407860
Score = 105 bits (116), Expect = 5e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888
|| || ||||| |||||| || || || |||||||| || || || || ||||||
Sbjct 686842 GAGAAGCATTTCATATCTCATGTATTAGCATTTTTTGCAGCCTCTGATGGAATTGTCAAT 686783
Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948
|||||| | ||| || ||| || ||||| || || |||| ||||| ||||| |||
Sbjct 686782 GAAAATCTTGTTGAACGATTTAGTCAGGAAGTACAGATAACAGAGGCACGTTGTTTCTAT 686723
Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008
|| || ||| | || || |||||| | ||||| ||||||||| | | || ||||||
Sbjct 686722 GGCTTCCAAGTAGCTATGGAAAATGTGCATTCAGAAATGTACTCATTATTAATTGATACG 686663
Query 44009 TACATCAAAGATG 44021
||||| |||||
Sbjct 686662 TACATTGCAGATG 686650
Score = 93.3 bits (102), Expect = 3e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || |||||||||||||| ||||||| |||||||| ||||||||||||||||| |
Sbjct 685942 AAAATCCATTTGATTTTATGGAGCATATTTCTTTGGAAGGTAAAACAAACTTTTTTGAGA 685883
Query 44553 AACGCGTTGGAGAATATCA 44571
|| ||||||||||| ||
Sbjct 685882 AAAAAGTTGGAGAATACCA 685864
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744
|||||||| ||| ||||| || ||||| ||||||| | ||| || |||||||||||
Sbjct 687065 GAAAATCCACGTAGATTTGTTGTCTTTCCTATTCAATGGCCTGATATTTGGCAAATGTAT 687006
Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794
|||||||| | || || || ||||| | || ||||||||| | ||||
Sbjct 687005 AAAAAAGCGGAAGCTTCCTTCTGGACTGTGGAGGAAGTTGATCTTTCTAA 686956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397425647527330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |