Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq202 107 2e-18 >seq202 Length=497029 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 112068 TGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATC 112127 ||| ||||| ||||||||||| |||||||| | ||| ||||||||||| || | || Sbjct 1071 TGCTCCATAATGTCTCCATTGAAATCCATATACAGGTCCCAGATCTCCTTCTTCTCTGTC 1012 Query 112128 TGGAAATTGCTCTCTATTCAACAAATCACTTCTAA-TATGAGGATTCCAAATCTTCACTC 112186 | |||| | | | || | || | || ||| | || |||||| | || Sbjct 1011 AGTAAATC-CACAAGAATCTAGGTATGTACGCGAACTATTTGCATCCCAAATATGAACAT 953 Query 112187 CTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCA 112246 || |||||||||| ||||||||||||||||| | |||||||||| ||||||||| | Sbjct 952 TCTTCTCTGATAACTCTTTTGCATTTGTGGATCCTTTTATAAACCATAACAATTCTTCTA 893 Query 112247 CAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 | || || |||| ||||| ||| ||||||| | |||||| Sbjct 892 CTACTCCCCTCCAAAACACTTGTTTTGTAGTTAATAATGGAAA 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391915668339358