Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq307 82.4 5e-11 >seq307 Length=2169461 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||| ||||| || |||||| ||| || | || || ||| | | Sbjct 1510546 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1510605 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| || || ||||||||||| |||| || Sbjct 1510606 AGACACAATAGAGAAT--GTCAAAGCTAAGATCCAAGACAAAGAAGGAATTCCTCCAGAC 1510663 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| ||||| ||||| || || || | || || | | | | |||| ||||| Sbjct 1510664 CAGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCAGATTAT 1510723 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||| |||||||| ||| | ||| ||||| Sbjct 1510724 AACATTCAAAAAGAATCCACACTTCATCTGGTT 1510756 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||| ||||| || |||||| ||| || | || || ||| | | Sbjct 1515443 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1515502 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| || || ||||||||||| |||| || Sbjct 1515503 AGACACAATAGAGAAT--GTCAAAGCTAAGATCCAAGACAAAGAAGGAATTCCTCCAGAC 1515560 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| ||||| ||||| ||||| || | || || | | | |||| ||||| Sbjct 1515561 CAGCAACGATTAATCTTTGCAGGAAAGCAGCTCGAAGATGGGAGGACACTGTCAGATTAT 1515620 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||| |||||||| ||| | ||| ||||| Sbjct 1515621 AACATTCAAAAAGAATCCACCCTTCATCTGGTT 1515653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355835223900582