Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq307 82.4 5e-11
>seq307
Length=2169461
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| || ||||| ||||| || |||||| ||| || | || || ||| | |
Sbjct 1510546 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1510605
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| || | ||| |||||| || || ||||||||||| |||| ||
Sbjct 1510606 AGACACAATAGAGAAT--GTCAAAGCTAAGATCCAAGACAAAGAAGGAATTCCTCCAGAC 1510663
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||||| ||||| ||||| || || || | || || | | | | |||| |||||
Sbjct 1510664 CAGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCAGATTAT 1510723
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999
||||| |||||||| ||| | ||| |||||
Sbjct 1510724 AACATTCAAAAAGAATCCACACTTCATCTGGTT 1510756
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| || ||||| ||||| || |||||| ||| || | || || ||| | |
Sbjct 1515443 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1515502
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| || | ||| |||||| || || ||||||||||| |||| ||
Sbjct 1515503 AGACACAATAGAGAAT--GTCAAAGCTAAGATCCAAGACAAAGAAGGAATTCCTCCAGAC 1515560
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||||| ||||| ||||| ||||| || | || || | | | |||| |||||
Sbjct 1515561 CAGCAACGATTAATCTTTGCAGGAAAGCAGCTCGAAGATGGGAGGACACTGTCAGATTAT 1515620
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999
||||| |||||||| ||| | ||| |||||
Sbjct 1515621 AACATTCAAAAAGAATCCACCCTTCATCTGGTT 1515653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355835223900582
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |