Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq467 93.3 4e-14 seq307 84.2 2e-11 >seq467 Length=2555529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| ||||||||||| | |||||| ||| | || || | || ||||| ||||| Sbjct 1365696 TCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAAG 1365755 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | | ||||||||| | || | | || |||||| |||||| ||| | | Sbjct 1365756 ATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACGTTT 1365815 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| || ||| || |||| || || ||||||| || || ||||| || Sbjct 1365816 TCAATGGTATCGGACGCCTCAACTTCCAATGTTATTGTTTTTCCAGTAAGTGTTTTTACG 1365875 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 1365876 AAGATCTGCAT 1365886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| ||||||||||| | |||||| ||| | || || | || ||||| ||||| Sbjct 1365468 TCTTTTTGGATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGCTTGCCAGCAAAG 1365527 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | | ||||||||| | || | | || |||||| |||||| ||| | | Sbjct 1365528 ATTAATCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTCACATTT 1365587 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || ||| || |||| || ||| ||||||| || || ||||| || Sbjct 1365588 TCAATGGTGTCTGACGCCTCAACTTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACG 1365647 Query 39274 AAGATTTGCAT 39284 || || ||||| Sbjct 1365648 AATATCTGCAT 1365658 >seq307 Length=2169461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| ||||||||||| | |||||| | | | || || ||||| || || ||||| Sbjct 1514715 TCTTTTTGAATATTATAATCTGAAAGTGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAAG 1514656 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | || ||||| || | || | | ||||| || ||| || ||||| || Sbjct 1514655 ATTAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGGATCTTAGCTTTGACATTC 1514596 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| | || || |||| ||||| |||| || || || || || ||| Sbjct 1514595 TCTATCGTATCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGTGTCTTGACA 1514536 Query 39274 AAGATTTGCAT 39284 ||||||||||| Sbjct 1514535 AAGATTTGCAT 1514525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429512796944858