Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq467 145 5e-30 seq307 129 4e-25 seq321 100 2e-16 seq665 91.5 1e-13 >seq467 Length=2555529 Score = 145 bits (160), Expect = 5e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||| || |||||||| || || | |||||||| | | Sbjct 1365431 AATGCAGATATTCGTGAAAACCCTTACTGGAAAAACTATAACCTTGGAAGTTGAGGCATC 1365372 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | |||| |||||| |||||||||||| | || ||||| || Sbjct 1365371 TGACACCATTGAGAATGTAAAGGCTAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCA 1365312 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| ||||||||| ||||||| | |||||| ||| || || || Sbjct 1365311 ACAGAGGTTGATTTTTGCTGGCAAACAATTGGAAGATGGACGCACATTATCTGACTATAA 1365252 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || |||||||| ||| | ||| Sbjct 1365251 CATTCAGAAAGAGTCGACACTCCAT 1365227 Score = 141 bits (156), Expect = 6e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||| || |||||||| || || | |||||||| | | Sbjct 1364842 AATGCAGATATTCGTGAAAACCCTTACTGGAAAAACTATAACCTTGGAAGTTGAGGCATC 1364783 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | |||| |||||| |||||||||||| | || |||||||| Sbjct 1364782 TGACACCATTGAGAATGTAAAGGCTAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 1364723 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || |||||| | ||||| | |||||| ||| ||||||||| Sbjct 1364722 ACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGACGCACGTTATCCGATTACAA 1364663 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 1364662 TATTCAAAAAGAATCAAC 1364645 Score = 140 bits (154), Expect = 2e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || | || ||||| || |||||||||||||| || | | Sbjct 1366115 AATGCAGATCTTCGTAAAGACATTGACTGGAAAGACCATCACTCTCGAAGTGGAAGCATC 1366056 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||||| | ||||| | |||| || |||||||||||| | || ||||||| Sbjct 1366055 AGATACAATTGAAAATGTTAAAGCCAAAA-TTCAGGACAAAGAAGGTATTCCTCCAGATC 1365997 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | || || ||||| || |||||| | ||||| | |||||| ||| |||||||| Sbjct 1365996 AACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGACGCACGTTATCCGATTACA 1365937 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || |||||||| || || Sbjct 1365936 ATATTCAAAAAGAATCAAC 1365918 Score = 134 bits (148), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || || || |||||||| || ||||| |||||||| | | Sbjct 1364386 AATGCAAATTTTTGTGAAGACTCTTACTGGAAAAACCATAACTCTGGAAGTTGAGGCGTC 1364327 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || ||||||| ||||||||||| | || |||||||| Sbjct 1364326 TGACACTATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCA 1364267 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| | ||||| || || || |||||||||||||| | || |||||| |||||| Sbjct 1364266 GCAGAGATTAATCTTCGCTGGTAAACAACTGGAAGATGGTCGTACACTTT--CTGATTAC 1364209 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || || | |||||||| Sbjct 1364208 AATATTCAGAAAGAATCTACTCTCCATTTAGT 1364177 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 14/211 (7%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| || || ||||| || || ||| | |||||||| | || Sbjct 1365202 ATGCAAATTTTCGTGAAAACTCTTACCGGAAAGACCATTACTTTGGAAGTTGAGGCATCG 1365143 Query 23671 GACACTGTTGA-AATATTAAAACAAAAA------------ATTGC-TGACAAAGAAGGTG 23716 |||||| |||| || ||||| | |||| | || | ||||||||||| Sbjct 1365142 GACACTATTGAGAACGTTAAAGCTAAAATCCAGGATAAGGAAGGCATCACAAAGAAGGTA 1365083 Query 23717 TACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTT 23776 | || ||||||||||| | || || ||||| || |||||| | ||||| | |||||| | Sbjct 1365082 TTCCTCCAGATCAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGACGCACGT 1365023 Query 23777 TAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || ||||||||| || |||||||| || || Sbjct 1365022 TATCCGATTACAATATTCAAAAAGAATCAAC 1364992 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | ||||||||||| || || ||||| ||||| | | Sbjct 1366570 ATGCAGATTTTCGTAAAGACATTGACGGGAAAAACCATAACCCTCGAGGTTGAGGCATCA 1366511 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | |||||| || ||||| || | || |||||||| Sbjct 1366510 GACACCATCGAGAATGTTAAAGC-AAAAATCCAGGATAAAGAGGGCATCCCACCAGATCA 1366452 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || |||||| | ||||| | |||||| | || ||||| Sbjct 1366451 GCAGAGATTGATCTTCGCTGGTAAACAATTAGAAGATGGACGCACACTTTCTGACTACAA 1366392 Query 23790 CATACAAAAAGAGTCCACA 23808 |||||||| || || ||| Sbjct 1366391 TATACAAAAGGAATCTACA 1366373 >seq307 Length=2169461 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || ||||| || ||||| |||||||| ||||| || | | Sbjct 1515215 AATGCAAATCTTTGTCAAGACACTCACAGGGAAAACCATCACTCTGGAAGTCGAAGCTTC 1515274 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| |||| ||| || |||||||| || | || || |||| Sbjct 1515275 TGACACAATTGAAAATGTAAAGGCAAAGATCCAGGACAAAGAGGGAATTCCCCCTCATCA 1515334 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || ||||| ||||| || |||||||| ||||| | | | || | |||||||| Sbjct 1515335 GCAACGATTAATCTTTGCTGGGAAACAACTTGAAGATGGAAGGACACTCTCTGATTACAA 1515394 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||| |||||| | ||| | ||||| || | ||||||||| Sbjct 1515395 CATTCAAAAAGAATCCACACTTCATCTGGTTTTGAGACTTCGAGGAGGA 1515443 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || || ||||| || ||||| ||||| || ||||| || || | Sbjct 1510546 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1510605 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | || | | ||||||||||| | || ||||| | Sbjct 1510606 AGACACAATAGAGAATGTCAAAGCTAAGA-TCCAAGACAAAGAAGGAATTCCTCCAGACC 1510664 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || || ||||| ||||| || || || || ||||| | | | || | ||||| | Sbjct 1510665 AGCAACGATTAATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACACTGTCAGATTATA 1510724 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| |||||||| |||||| | ||| | ||| |||| | ||||||||| Sbjct 1510725 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTAAGACTTCGAGGAGGA 1510774 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || || ||||| |||||||| ||||| || ||||| || | | Sbjct 1515671 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 1515730 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | || | | |||||||| || |||| ||||||| Sbjct 1515731 TGACACAATAGAGAATGTCAAAGCTAAGA-TCCAGGACAAAGAGGGAATACCTCCAGATC 1515789 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || || ||||| ||||| || || || || ||||| | | || | ||||||| Sbjct 1515790 AGCAACGATTAATCTTTGCAGGAAAGCAGCTCGAAGATGGGAGGACACTCTCTGATTACA 1515849 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| |||||||| |||||| | ||| | ||| | || | || |||||| Sbjct 1515850 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGAGACTTCGGGGAGGA 1515899 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || || ||||| || ||||| ||||| || ||||| || || | Sbjct 1515443 AATGCAAATCTTCGTGAAGACTCTCACAGGGAAAACTATCACCCTAGAAGTGGAAGCCTC 1515502 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | || | | ||||||||||| | || ||||| | Sbjct 1515503 AGACACAATAGAGAATGTCAAAGCTAAGA-TCCAAGACAAAGAAGGAATTCCTCCAGACC 1515561 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || || ||||| ||||| || || || || ||||| | | || | ||||| | Sbjct 1515562 AGCAACGATTAATCTTTGCAGGAAAGCAGCTCGAAGATGGGAGGACACTGTCAGATTATA 1515621 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| |||||||| ||||| | ||| | ||| |||| | ||||||||| Sbjct 1515622 ACATTCAAAAAGAATCCACCCTTCATCTGGTTCTAAGACTTCGAGGAGGA 1515671 >seq321 Length=1097274 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | ||||| ||||| ||||| ||||| || || | | Sbjct 785460 ATGCAGATATTCGTGAAAACTTTGACGGGCAAAACTATCACGCTCGAGGTAGAAGCGTCT 785401 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| ||||| |||||| || |||||||| | || || |||||| Sbjct 785400 GATACCATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAA 785341 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || || || |||||| | ||||| | ||| || | ||||| || Sbjct 785340 CAGCGTCTAATTTTCGCTGGAAAACAATTAGAAGATGGACGTACCCTCTCTGATTATAAT 785281 Query 23791 ATACAAAAAG 23800 || || |||| Sbjct 785280 ATCCAGAAAG 785271 >seq665 Length=2298905 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 32826 ACATAATCTTTTCCTTTAATCAATTTTACGTATTGACAATTGGGAAACCAACGAGCGTGC 32885 |||||||||| ||||| || || | || || | ||| || | |||||| || || Sbjct 182827 ACATAATCTTGTCCTTGAACCATTAATAAATAATAACACTTAGAAAACCATTTTGCATGT 182886 Query 32886 ATATGCCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGCAGTAAAAACAC 32945 | ||| || || || || | ||||||||| || || || || | |||| | |||| Sbjct 182887 TGTTCCCATGGATCATCTTCTGGTTCCCAATCCTTTAAGCCACCTCCACAGTGATAACAT 182946 Query 32946 ACAACTTTGTCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATTGTGTGGGTTTC 33005 | || ||| ||| | || ||||| ||||||| || |||||||||||| | || Sbjct 182947 AAGGTTTGGTCACCTTTACCAATATAATAAAAACCAGCATCTGCTAATTGTTCTTTTGTC 183006 Query 33006 TGTTGCAAAGATTTTGGCCA 33025 ||| ||| |||||||||||| Sbjct 183007 TGTGGCATAGATTTTGGCCA 183026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337983787263128