Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq105 201 2e-46
seq305 127 3e-24
>seq105
Length=615523
Score = 201 bits (222), Expect = 2e-46
Identities = 230/309 (74%), Gaps = 0/309 (0%)
Strand=Plus/Minus
Query 77030 TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT 77089
||||||||||||| | || ||||||| ||| || |||| || | ||| | | ||
Sbjct 157522 TTGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCT 157463
Query 77090 CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCT 77149
|| |||||| ||| | | ||||||||| ||||| ||||||||||| ||||| ||||
Sbjct 157462 TTCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCG 157403
Query 77150 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 77209
|| || ||||| ||||| || || ||||| | ||||||||| |||||||||||||| ||
Sbjct 157402 TCGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGC 157343
Query 77210 AGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 77269
||||| || |||||||| || || | ||| ||| |||||||| || ||| || ||
Sbjct 157342 GGTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAAT 157283
Query 77270 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTA 77329
||| |||||||| | ||| ||||| | ||| | ||| ||| | ||| | ||| ||
Sbjct 157282 TTTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGTGTAACGTTCCACATATCATA 157223
Query 77330 TTGTAGAAT 77338
||||| |||
Sbjct 157222 TTGTAAAAT 157214
Score = 143 bits (158), Expect = 4e-29
Identities = 129/162 (80%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972
||||||| ||| |||||||| |||||||||||| | |||||||| |||||| |||
Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332
Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032
|||||||| | ||| |||||| |||| ||||||||||||||| |||||||| |||||
Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272
Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074
| |||| ||||| |||| | ||||| |||||| || |||
Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230
Score = 134 bits (148), Expect = 2e-26
Identities = 188/264 (71%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437
|| |||||||| ||| ||||| | |||| ||| ||||| ||||||||||| |||||
Sbjct 155795 CTGGACATTTGCTGAGTCACAGTACATGCAGAAAACAATGTAGGAGATGCATGTGTAAAA 155736
Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497
|| ||| || | | |||||| ||||| || ||| ||| || || ||||||
Sbjct 155735 TATCGTTCTGACAAAAAATTGTAAGTTTCTATGGCTTTTTCAATATCTTCACCATGAATA 155676
Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557
| || || || | |||||||||||| || || |||||||| || || ||||||
Sbjct 155675 GCAACTGCGACTCTCATCAACATATGTTGTGGCCTTTCAACAACTTTTCCATGTATTTTT 155616
Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617
| || || | |||| | |||||||| |||||||| ||||| ||| ||||| ||
Sbjct 155615 AGCAGATAGCTTCTTTCAAGCGTTTTAAAGCCAAAATAATTGTAACTAAAATCTCTATCA 155556
Query 78618 TAAATAATAACAGAATTTAGTTTA 78641
||||| || | ||||||| ||||
Sbjct 155555 TAAATTATTGCTGAATTTAATTTA 155532
Score = 125 bits (138), Expect = 1e-23
Identities = 129/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131
|| ||||| ||||| ||||| | ||| || | |||||| | |||||||||||||||||||
Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110
Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191
| || | ||||||| |||||||| ||||||||||| | |||||| || ||||||||
Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050
Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAG 78240
|| || || | ||| || | | || |||||| ||| ||| ||||
Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACCAG 156001
Score = 122 bits (134), Expect = 1e-22
Identities = 244/358 (68%), Gaps = 8/358 (2%)
Strand=Plus/Minus
Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583
|||| |||||||||||||| ||| || |||| ||||||||||| ||||| ||||| |
Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805
Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643
|| |||| ||||| | ||| | | ||| | ||| ||| | || ||||| |||
Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATTTTTGTCACCTTTTTAAGTTTTTGAA 156745
Query 77644 AATCAAA-----TCTTCCATCTA-TAACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697
|||| || | || | | | |||||||| || | || || || || | ||| |
Sbjct 156744 AATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAATTGC 156685
Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757
| || || || |||| ||| ||| ||| || | | || ||||||| |||||||| |
Sbjct 156684 ATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTACTCT 156625
Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATA 77816
| || || || | ||||| || || |||| |||||| ||| || || ||||| |||
Sbjct 156624 TAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGA-TCTTTGTAAAGCATA 156566
Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874
|||| || || || || | || | | | |||| | |||| | |||||||||
Sbjct 156565 TACGGGGTTCCTGTCTCTACTTGAGCTATAAGGATAGCTGTCCATAAATCTCTAGCTT 156508
>seq305
Length=1407860
Score = 127 bits (140), Expect = 3e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450
|||| ||| |||| || ||| ||||| ||||| | |||||||| || || | ||
Sbjct 686641 TTTCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCACAT 686700
Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510
|||| || || | || || || || ||||| | || ||||| |||||||| ||| ||
Sbjct 686701 TTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGAC 686760
Query 48511 AAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATA 48570
|||||||||| | | ||| ||||| || ||||||||| || ||||||||||||||||
Sbjct 686761 TAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATA 686820
Query 48571 CATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603
|||| || |||| || || | |||||||
Sbjct 686821 CATGAGATATGAAATGCTTCTCACTAGAAGTCA 686853
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896
||| |||||| ||||| ||||| || || |||||| ||||| || ||||| |||||
Sbjct 685848 CATGACTCCCCACTTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTC 685907
Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATT 47929
||| || |||| ||||||||||||||||||||
Sbjct 685908 CAAAGAAATATGCTCCATAAAATCAAATGGATT 685940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694614390066240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |