Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq105 201 2e-46 seq305 127 3e-24 >seq105 Length=615523 Score = 201 bits (222), Expect = 2e-46 Identities = 230/309 (74%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 77030 TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT 77089 ||||||||||||| | || ||||||| ||| || |||| || | ||| | | || Sbjct 157522 TTGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCT 157463 Query 77090 CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCT 77149 || |||||| ||| | | ||||||||| ||||| ||||||||||| ||||| |||| Sbjct 157462 TTCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCG 157403 Query 77150 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 77209 || || ||||| ||||| || || ||||| | ||||||||| |||||||||||||| || Sbjct 157402 TCGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGC 157343 Query 77210 AGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 77269 ||||| || |||||||| || || | ||| ||| |||||||| || ||| || || Sbjct 157342 GGTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAAT 157283 Query 77270 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTA 77329 ||| |||||||| | ||| ||||| | ||| | ||| ||| | ||| | ||| || Sbjct 157282 TTTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGTGTAACGTTCCACATATCATA 157223 Query 77330 TTGTAGAAT 77338 ||||| ||| Sbjct 157222 TTGTAAAAT 157214 Score = 143 bits (158), Expect = 4e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||||| ||| |||||||| |||||||||||| | |||||||| |||||| ||| Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 |||||||| | ||| |||||| |||| ||||||||||||||| |||||||| ||||| Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 | |||| ||||| |||| | ||||| |||||| || ||| Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230 Score = 134 bits (148), Expect = 2e-26 Identities = 188/264 (71%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 || |||||||| ||| ||||| | |||| ||| ||||| ||||||||||| ||||| Sbjct 155795 CTGGACATTTGCTGAGTCACAGTACATGCAGAAAACAATGTAGGAGATGCATGTGTAAAA 155736 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 || ||| || | | |||||| ||||| || ||| ||| || || |||||| Sbjct 155735 TATCGTTCTGACAAAAAATTGTAAGTTTCTATGGCTTTTTCAATATCTTCACCATGAATA 155676 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 | || || || | |||||||||||| || || |||||||| || || |||||| Sbjct 155675 GCAACTGCGACTCTCATCAACATATGTTGTGGCCTTTCAACAACTTTTCCATGTATTTTT 155616 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 | || || | |||| | |||||||| |||||||| ||||| ||| ||||| || Sbjct 155615 AGCAGATAGCTTCTTTCAAGCGTTTTAAAGCCAAAATAATTGTAACTAAAATCTCTATCA 155556 Query 78618 TAAATAATAACAGAATTTAGTTTA 78641 ||||| || | ||||||| |||| Sbjct 155555 TAAATTATTGCTGAATTTAATTTA 155532 Score = 125 bits (138), Expect = 1e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 || ||||| ||||| ||||| | ||| || | |||||| | ||||||||||||||||||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 | || | ||||||| |||||||| ||||||||||| | |||||| || |||||||| Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAG 78240 || || || | ||| || | | || |||||| ||| ||| |||| Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACCAG 156001 Score = 122 bits (134), Expect = 1e-22 Identities = 244/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| |||||||||||||| ||| || |||| ||||||||||| ||||| ||||| | Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || |||| ||||| | ||| | | ||| | ||| ||| | || ||||| ||| Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATTTTTGTCACCTTTTTAAGTTTTTGAA 156745 Query 77644 AATCAAA-----TCTTCCATCTA-TAACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 |||| || | || | | | |||||||| || | || || || || | ||| | Sbjct 156744 AATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAATTGC 156685 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || || |||| ||| ||| ||| || | | || ||||||| |||||||| | Sbjct 156684 ATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTACTCT 156625 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATA 77816 | || || || | ||||| || || |||| |||||| ||| || || ||||| ||| Sbjct 156624 TAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGA-TCTTTGTAAAGCATA 156566 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 |||| || || || || | || | | | |||| | |||| | ||||||||| Sbjct 156565 TACGGGGTTCCTGTCTCTACTTGAGCTATAAGGATAGCTGTCCATAAATCTCTAGCTT 156508 >seq305 Length=1407860 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||| || ||| ||||| ||||| | |||||||| || || | || Sbjct 686641 TTTCTTTGGCATCTGCAATGTACGTATCAATTAATAATGAGTACATTTCTGAATGCACAT 686700 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510 |||| || || | || || || || ||||| | || ||||| |||||||| ||| || Sbjct 686701 TTTCCATAGCTACTTGGAAGCCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGAC 686760 Query 48511 AAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATA 48570 |||||||||| | | ||| ||||| || ||||||||| || |||||||||||||||| Sbjct 686761 TAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATA 686820 Query 48571 CATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603 |||| || |||| || || | ||||||| Sbjct 686821 CATGAGATATGAAATGCTTCTCACTAGAAGTCA 686853 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||| |||||| ||||| ||||| || || |||||| ||||| || ||||| ||||| Sbjct 685848 CATGACTCCCCACTTTTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTC 685907 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATT 47929 ||| || |||| |||||||||||||||||||| Sbjct 685908 CAAAGAAATATGCTCCATAAAATCAAATGGATT 685940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694614390066240