Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq105 183 4e-41 seq305 114 2e-20 >seq105 Length=615523 Score = 183 bits (202), Expect = 4e-41 Identities = 226/309 (73%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 75625 TTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCT 75684 ||||||||| || | | ||||||| ||| || || | || | ||| | | ||| Sbjct 157522 TTGAATGGAACCATTGTTTGCTATAATTTCATTTTTCATATTTTCGTCCCAAAGATCTCT 157463 Query 75685 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCT 75744 || |||||| ||| | | ||||||||| || || ||||||||||| ||||| |||| Sbjct 157462 TTCAGTTAAATCTCGTAATAAATGAGGATTCACTATCTGAAATTCTCCTGACAAAACTCG 157403 Query 75745 TCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 75804 ||| || ||||| ||||| || || ||||| | ||||||||| |||||||||||||| || Sbjct 157402 TCGTGTATAAATGTTACTAGTGTAAGGTTCTATAGATTCATTATTTCCCAAAATTTGCGC 157343 Query 75805 AGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 75864 || || || || ||||| || || | ||| ||| |||||||| || ||| || || Sbjct 157342 GGTAGATGCTGTTGGCATTGGAGCTATCAACAAAGAATTTCTGACTCCGTGTTTTGCAAT 157283 Query 75865 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTA 75924 ||| |||||||| | ||| ||||| | ||| | |||| ||| | ||| | ||| || Sbjct 157282 TTTTTCTTTTAGCGCTGCCCAGTCCCATAAATCAGTTGGTGTAACGTTCCACATATCATA 157223 Query 75925 TTGTAGAAT 75933 ||||| ||| Sbjct 157222 TTGTAAAAT 157214 Score = 140 bits (154), Expect = 5e-28 Identities = 128/162 (79%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 |||||||| ||| |||||||| |||||||||||| | || |||||| |||||| ||| Sbjct 156391 GTATATAAAGTTTCGAATTCATCACCCCAAACATCAGCTAATCCAGGAGATTCATGTGGA 156332 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 |||||||| | ||| |||||| |||| ||| ||||||||||| |||||||| ||||| Sbjct 156331 CACATCAAAGTCCAAACACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCAC 156272 Query 76628 AGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 | |||| ||||| |||| | |||| |||||| || ||| Sbjct 156271 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCTTTACCT 156230 Score = 136 bits (150), Expect = 6e-27 Identities = 188/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || |||||||| ||| ||||| | |||| ||||||||||||||||||||| || || Sbjct 155795 CTGGACATTTGCTGAGTCACAGTACATGCAGAAAACAATGTAGGAGATGCATGTGTAAAA 155736 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 || ||| || | | |||||| ||||| || || ||| ||||| |||||| Sbjct 155735 TATCGTTCTGACAAAAAATTGTAAGTTTCTATGGCTTTTTCAATATCTTCACCATGAATA 155676 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 | || ||||| | |||||||||||| || || | ||| ||| || || |||||| Sbjct 155675 GCAACTGCGACTCTCATCAACATATGTTGTGGCCTTTCAACAACTTTTCCATGTATTTTT 155616 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 | || || | |||| | |||||||| |||||||| ||||| ||| ||||| || Sbjct 155615 AGCAGATAGCTTCTTTCAAGCGTTTTAAAGCCAAAATAATTGTAACTAAAATCTCTATCA 155556 Query 77213 TAAATAATAACCGAATTTAGTTT 77235 ||||| || | ||||||| ||| Sbjct 155555 TAAATTATTGCTGAATTTAATTT 155533 Score = 127 bits (140), Expect = 3e-24 Identities = 213/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || ||||| ||||| ||||| | || || | |||||| | ||||||||||||||||||| Sbjct 156169 CCAGTATTTTTTTTGAGATCCAAAAATTCAAAAATATCTGCATGCCATGGTTCTAGATAT 156110 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 | || | | || || |||||||| ||||||||||| | |||||| || |||||||| Sbjct 156109 ACAGCAAATGCTCCAGGCCGTTTATTTCCTCCCTGATCAACATATCTAGCTGTGTTATTG 156050 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 || || || | ||| || | | ||| |||||| |||| ||| |||| || | Sbjct 156049 TACACCCTAAGCATCGGTACTAAGCCATTAGATACACCAAGTGTACCAGCTATTGGTGTA 155990 Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906 || | || || || | | | ||| || || || || || ||| || | Sbjct 155989 CCTCTAGCTCGTATGCAATGTACATTTAGTCCAATACCACCAGCTGATTTGCTAATCAAT 155930 Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGA 76966 ||||| | |||||||| ||||| || || || || ||||| || |||| |||||| Sbjct 155929 GCACACCTCTTCAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGAAAGAAGG 155870 Query 76967 AAACAGCT 76974 ||||| || Sbjct 155869 AAACAACT 155862 Score = 116 bits (128), Expect = 5e-21 Identities = 243/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 |||| |||||||||||||| ||| || ||| ||||||||||| || || ||||| | Sbjct 156864 TACCTATAGGTCTATGTCTGAAATTTGACTTTTTGGCTTCTGGAATCGGATAGTAATTGA 156805 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 ||| |||| ||||| | ||| | ||| | ||| ||| | || ||||| ||| Sbjct 156804 CATCAATAACTTTATCCAAATTACAAGTAACGATTTTTGTCACCTTTTTAAGTTTTTGAA 156745 Query 76239 AATCAAAT-TTTCCATCTA-----TCACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 |||| || ||| | | ||||||||||||||| || || || || | ||| | Sbjct 156744 AATCGAACGTTTTGTTAGAGGAATTCACAAACATATTAACGGCAATTGAAGCCAAATTGC 156685 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || || |||| || ||| ||| || | | || || |||| |||||||| || Sbjct 156684 ATACAGCAACTTCATCCGCGCTGGAATACTGAACAACTTCTGTACATAAATTACTACTCT 156625 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACA 76411 | || ||||| | ||||| || || |||| || || ||| || || ||||| | | Sbjct 156624 TAATTGTTCCTATGTTTTGCTGATTTGACTTTCGATTGCAGTGA-TCTTTGTAAAGCATA 156566 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 76469 |||| ||||| || || | || | | | |||| | |||| | ||||||||| Sbjct 156565 TACGGGGTTCCTGTCTCTACTTGAGCTATAAGGATAGCTGTCCATAAATCTCTAGCTT 156508 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 || ||||| || || || | | ||| || || ||||| || || ||||| ||||| ||| Sbjct 157106 TAGGTTTCATATGTTCCCTTTTCTTCGGCAAGCTCGCAGCTAGCTTCTAAGGCACCATAA 157047 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 || | |||||| || || | |||| || | ||||||||| || ||||| || || Sbjct 157046 TACAATGTTTCAAATATTTGGATATTTAGCTTTTGCGCTTCTTCGCTTTCAAATGGGTAT 156987 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | | || ||||||||||| ||||| || | ||||||||| Sbjct 156986 CGCATTAAAAGGAATGCATCTGCAAGTCCTTGTATTCCAATACC 156943 >seq305 Length=1407860 Score = 114 bits (126), Expect = 2e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 || ||||| ||||| | |||||||||||||| | ||||| ||||| | || || Sbjct 686661 TACGTATCAATTAATAATGAGTACATTTCTGAATGCACATTTTCCATAGCTACTTGGAAG 686720 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATT 47018 || || ||||| | ||| || || |||||||| || || |||||||||| |||| ||| Sbjct 686721 CCATAGAAACAACGTGCCTCTGTTATCTGTACTTCCTGACTAAATCGTTCA-ACAAGATT 686779 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATG 47063 ||||| || ||||||||| || ||||||||||| |||||||| Sbjct 686780 TTCATTGACAATTCCATCAGAGGCTGCAAAAAATGCTAATACATG 686824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 |||||| ||||| || ||||| ||||| ||| | || ||||||||| ||||| | Sbjct 686051 CAGTCTGTCTGCGACAAATTCGATATATTGACACATAAGTTTACAATTCATGCCTATCAT 686110 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || || |||| || || || | ||| ||||||||||| |||||||| || || Sbjct 686111 TTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTCCACAGCATCTTTAATAAT 686170 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 || || ||| || | || || || | |||||||||||||||||||||||| Sbjct 686171 TGACGTAACTCGCTCAGAAGACGGCTTTTGTATAATATGTTTAAACATTAAACATGCAAA 686230 Query 46638 ATCACAATG 46646 ||||||||| Sbjct 686231 ATCACAATG 686239 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATC--TTCT-TGTGACATAACTCCCATTTT 46340 |||||||||| ||| | | ||||| | | || |||| | | ||| |||||| || Sbjct 685803 TTAAAAGTCGGCATTAACTGTAAAATTACTTTCAATTCTATCTTGCATGACTCCCCACTT 685862 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 ||||||||| || || |||||| ||||| || ||||| |||||||| || |||| || Sbjct 685863 TTGGTATTCTCCAACTTTTTTCTCAAAAAAGTTTGTTTTACCTTCCAAAGAAATATGCTC 685922 Query 46401 CATAAAATCAAACGGATT 46418 |||||||||||| ||||| Sbjct 685923 CATAAAATCAAATGGATT 685940 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 ||| ||| ||| || | ||| ||||| || | |||||||| || || || |||||||| Sbjct 686947 ATTTATACCTTA-GAAAGATCAACTTCCTCCACAGTCCAGAAGGAAGCTTCCGCTTTTTT 687005 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 |||||| | ||| |||||| | |||| || ||||| | |||||||||| |||||||| Sbjct 687006 ATACATTTGCCAAATATCAGGCCATTGAATAGGAAAGACAACAAATCTACGTGGATTTT 687064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712878559413120