Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq467 93.3 4e-14 >seq467 Length=2555529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/235 (70%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||| || || || ||||| || Sbjct 1366344 CCACCACGGAGACGGAGTACAAGGTGAAGTGTAGATTCCTTTTGTATATTGTAGTCAGAA 1366403 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | || || || ||||| |||| | ||| || || | || Sbjct 1366404 AGTGTGCGTCCATCTTCTAATTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGG 1366463 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||| || ||| ||||||| |||| ||| | | ||||| | ||| || Sbjct 1366464 ATGCCCTCTTTATCCTGGATTTTT-GCTTTAACATTCTCGATGGTGTCTGATGCCTCAAC 1366522 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT-GTTATC 41868 ||| | ||||| ||||| ||||||| |||||||||||||||||||| |||||| Sbjct 1366523 CTCGAGGGTTATGGTTTTTCCCGTCAATGTCTTTACGAAAATCTGCATGGTTATC 1366577 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||| ||||||||||| ||||| || Sbjct 1364387 CCACCACGAAGACGGAGTACAAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCAGAT 1364446 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| | || || | |||||| || ||||| |||| | || ||||| | ||| Sbjct 1364447 AGTGTGCGCCCATCTTCTAACTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGGGGG 1364506 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | || || || ||| || |||| || | |||| | | |||||| | ||| || Sbjct 1364507 ATGCCTTCTTTATCC-TGGATTTTAGCCTTAACGTTCTCAATAGTGTCTGATGCCTCAAC 1364565 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || || || || || |||||||| Sbjct 1364566 TTCCAAAGTAATGGTCTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 1364613 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||| ||||||||||||||||| || Sbjct 1365204 CCACCACGGAGACGAAGTACAAGATGGAGTGTCGACTCTTTCTGAATGTTATAGTCAGAT 1365263 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | || ||||| || || |||| | ||||||||| | ||| Sbjct 1365264 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGAGGA 1365323 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| |||| | ||| | | | ||||| | ||| || Sbjct 1365324 ATACCTTCTTTGTCC-TGAATTTTAGCCTTTACATTCTCAATGGTGTCAGATGCCTCAAC 1365382 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||| ||||| || || || || || ||||| |||||||| Sbjct 1365383 TTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACGAATATCTGCAT 1365430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||| ||||| || ||||| || Sbjct 1366116 CCACCACGGAGACGGAGCACAAGGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAT 1366175 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | || ||||| ||||| ||||| | |||||||| | ||| Sbjct 1366176 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAGTCTTTGTTGGTCTGGAGGA 1366235 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | | ||| || ||| ||| |||| |||| ||| || |||||| | || || Sbjct 1366236 ATACCCTCTTTATCC-TGAATTTTAGCTTTAACATTTTCAATAGTGTCTGAGGCTTCAAC 1366294 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||||||||| |||||||| Sbjct 1366295 TTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTTACGAAGATCTGCAT 1366342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462267790039200