Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq467 93.3 4e-14
>seq467
Length=2555529
Score = 93.3 bits (102), Expect = 4e-14
Identities = 164/235 (70%), Gaps = 3/235 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || || ||||| || || || ||||| ||
Sbjct 1366344 CCACCACGGAGACGGAGTACAAGGTGAAGTGTAGATTCCTTTTGTATATTGTAGTCAGAA 1366403
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || | || || || ||||| |||| | ||| || || | ||
Sbjct 1366404 AGTGTGCGTCCATCTTCTAATTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGG 1366463
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||| || ||| ||||||| |||| ||| | | ||||| | ||| ||
Sbjct 1366464 ATGCCCTCTTTATCCTGGATTTTT-GCTTTAACATTCTCGATGGTGTCTGATGCCTCAAC 1366522
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT-GTTATC 41868
||| | ||||| ||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 1366523 CTCGAGGGTTATGGTTTTTCCCGTCAATGTCTTTACGAAAATCTGCATGGTTATC 1366577
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || ||| ||||||||||| ||||| ||
Sbjct 1364387 CCACCACGAAGACGGAGTACAAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCAGAT 1364446
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| |||||| | || || | |||||| || ||||| |||| | || ||||| | |||
Sbjct 1364447 AGTGTGCGCCCATCTTCTAACTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGGGGG 1364506
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814
| || || || ||| || |||| || | |||| | | |||||| | ||| ||
Sbjct 1364507 ATGCCTTCTTTATCC-TGGATTTTAGCCTTAACGTTCTCAATAGTGTCTGATGCCTCAAC 1364565
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || || || || || || || ||||||||
Sbjct 1364566 TTCCAAAGTAATGGTCTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 1364613
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || ||| ||||||||||||||||| ||
Sbjct 1365204 CCACCACGGAGACGAAGTACAAGATGGAGTGTCGACTCTTTCTGAATGTTATAGTCAGAT 1365263
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || || | || ||||| || || |||| | ||||||||| | |||
Sbjct 1365264 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGAGGA 1365323
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| | || |||||| ||| |||| | ||| | | | ||||| | ||| ||
Sbjct 1365324 ATACCTTCTTTGTCC-TGAATTTTAGCCTTTACATTCTCAATGGTGTCAGATGCCTCAAC 1365382
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| ||||| ||||| || || || || || ||||| ||||||||
Sbjct 1365383 TTCCAAGGTTATAGTTTTTCCAGTAAGGGTTTTCACGAATATCTGCAT 1365430
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||| || || || || ||||| ||||| || ||||| ||
Sbjct 1366116 CCACCACGGAGACGGAGCACAAGGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCAGAT 1366175
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || || | || ||||| ||||| ||||| | |||||||| | |||
Sbjct 1366176 AATGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAGATCAGTCTTTGTTGGTCTGGAGGA 1366235
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814
| | ||| || ||| ||| |||| |||| ||| || |||||| | || ||
Sbjct 1366236 ATACCCTCTTTATCC-TGAATTTTAGCTTTAACATTTTCAATAGTGTCTGAGGCTTCAAC 1366294
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || || || || |||| ||||||||||| ||||||||
Sbjct 1366295 TTCAAGAGTGATGGTCTTTCCAGTCAATGTCTTTACGAAGATCTGCAT 1366342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462267790039200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |